Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30810
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0559 + 34719296-34719410,34719519-34719577,34719664-347213...    29   3.3  
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901...    28   5.7  
04_04_0680 - 27217563-27220088                                         28   7.5  
01_01_0093 + 727977-729854,729877-729930                               28   7.5  
12_02_0796 + 23224357-23224427,23225714-23225810,23226335-232271...    27   9.9  
10_08_0727 - 20133293-20135701                                         27   9.9  
03_02_0821 - 11519840-11519989,11520333-11520476,11520556-115207...    27   9.9  

>03_06_0559 +
           34719296-34719410,34719519-34719577,34719664-34721322,
           34722421-34722562,34722645-34723330
          Length = 886

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 463 PLRGTIMGGLEQLVNSAVTNFQTYSTSNLNDLSCVTSIATSLDYRLKTNL 612
           PL G I  GLE+ +NS + + Q     N  D+     +A     R+   L
Sbjct: 731 PLNGQICSGLERFINSDILDLQLLEDLN-GDIRLAVGVAEGKTLRMNRRL 779


>01_06_1729 +
           39486553-39487413,39487953-39488020,39489574-39490154,
           39490623-39491432,39491738-39493035
          Length = 1205

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 10  KGSVLNYPNVQQTVTSLYPATLSGDLAEAILIQGTERGS--SSISIGTAGNWNST 168
           +GS  N  +V++      P++L G + E + + GTE  +   SI+I  + +  ST
Sbjct: 670 RGSTKNMYSVKEKKVQSKPSSLKGTVKETVDVSGTENDARCKSITISVSEHRGST 724


>04_04_0680 - 27217563-27220088
          Length = 841

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 388 SQTHITNQNLAGETFAFAAALDTNMPLR 471
           + T I NQ + G   A   ++DTN P+R
Sbjct: 460 AMTAIANQKIEGTNLALKKSMDTNTPVR 487


>01_01_0093 + 727977-729854,729877-729930
          Length = 643

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 89  PRQFLFKELKEAVHQFRSVQQETG 160
           PR+F F++L+EA  QFR    E G
Sbjct: 320 PRRFTFQQLQEATDQFRDKLGEGG 343


>12_02_0796 +
           23224357-23224427,23225714-23225810,23226335-23227146,
           23227593-23227619,23227620-23229624
          Length = 1003

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 478 IMGGLEQLVNSAVTNFQTYSTSNLNDLSCVTSIATSLDYRL 600
           I GG + LVN+ V++ +     NL  L   +S   S+D+ L
Sbjct: 767 IHGGTKTLVNNLVSSLRKLGRLNLRSLCIQSSFKYSIDFLL 807


>10_08_0727 - 20133293-20135701
          Length = 802

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
 Frame = +1

Query: 73  LSGDLAEAILIQGTERGSSSISIGTAGNWNSTQAPRHFMIHSRVNIEMTDPEIRGGIDGF 252
           L G+  E +L     R  +  S+   GN  S   P  F     V +  T  ++   + G 
Sbjct: 87  LHGEGLEGVLSPSLARLPALESVSLFGNRLSGVIPASF-----VGLAATLHKLN--LSGN 139

Query: 253 VLGSAITSVLGTFSSLRLSQLLDMYYSPRNG-IFSQAFRACNR-RELSQTH 399
            L   I + LGTF  LR   LLD+ Y+  +G I +  F  C R R +S  H
Sbjct: 140 ALSGEIPAFLGTFPMLR---LLDLSYNAFSGEIPATLFGECPRLRYVSLAH 187


>03_02_0821 -
           11519840-11519989,11520333-11520476,11520556-11520754,
           11521309-11521412,11521488-11521598,11521653-11521771,
           11521858-11522002,11522516-11522568,11522676-11522721,
           11522818-11522963,11523691-11523760,11524930-11525083,
           11525186-11525307,11525612-11525835,11526317-11526371,
           11526793-11526972
          Length = 673

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 70  TLSGDLAEAILIQGTERGSSSISIGTAGNWNSTQAPRHFMIH 195
           TL   LAEA  + G ER   S       +W     P ++M+H
Sbjct: 492 TLVAALAEAAFLIGLERNRFSPDAIVFNSWQHYGCPNYWMLH 533


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.130    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,007,802
Number of Sequences: 37544
Number of extensions: 288384
Number of successful extensions: 730
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)