Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30810
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15756| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   8e-13
SB_48343| Best HMM Match : CBF (HMM E-Value=1.3)                       44   1e-04
SB_47150| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-15)                 29   4.4  
SB_47729| Best HMM Match : ASC (HMM E-Value=1.8e-07)                   28   5.8  

>SB_15756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 70.9 bits (166), Expect = 8e-13
 Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 4/205 (1%)
 Frame = +1

Query: 31  PNVQQTVTSLYPATLSGDLAEAILIQGTERGSSSISIGTAGNWN-STQAPRHFMIHSRVN 207
           P    TV +LY AT++ DL  +IL +  + G S+   G  G+W  S + P  F   +   
Sbjct: 138 PTASDTVDNLYAATIARDLGISILFK--KNGGSTSYFGPGGSWEPSEECPNKFRKPAAAE 195

Query: 208 I-EMTDPEIRGGIDGFVLGSAITSVLGTFSSLRLSQLLDMYYSPRNGIFSQAFRACNRRE 384
             + T+ ++ G +DGF+LGS +     +   +RL QLL MYYS     +   F +CNR +
Sbjct: 196 FTKATNAQLLGDMDGFILGSKVAE--WSSKGVRLGQLLRMYYS-TGACYDTTFASCNRYD 252

Query: 385 LSQTHITNQNLAGETFAFAAA--LDTNMPLRGTIMGGLEQLVNSAVTNFQTYSTSNLNDL 558
                +    L  +   FA A  L  N    G  +  +    ++ ++    Y  +   + 
Sbjct: 253 KFSKLVNQDVLLTQVIRFANAEYLKNNGSYPGVKVDDIRVEADAMISGLSRYLENIHGEQ 312

Query: 559 SCVTSIATSLDYRLKTNLYIVLDSS 633
            C T     +   L +NL  ++D S
Sbjct: 313 VCKT-----IGCELPSNLVFLMDES 332


>SB_48343| Best HMM Match : CBF (HMM E-Value=1.3)
          Length = 669

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +1

Query: 142 GTAGNWNSTQAPRHFMIHSRVNIEMTDPEIRGGIDGFVLGSAITSVLGTFSSLRLSQLLD 321
           G  G WNS      + + +    + +D  + G +DGF+LG  ++        +RL QLL 
Sbjct: 216 GPGGTWNSLPCSSTYTVTTSQISDASDALLLGDVDGFLLGYGVSK--WAKKGVRLGQLLR 273

Query: 322 MYYSPRNGI-FSQAFRA 369
           MYYS  NG+ + + F+A
Sbjct: 274 MYYS--NGVCYDETFQA 288


>SB_47150| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-15)
          Length = 382

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 317 WTCIIHRGMGYLVKLFVHVIV 379
           W CI+HRG+G++  L  + ++
Sbjct: 107 WQCILHRGIGFIFPLCTNFLI 127


>SB_47729| Best HMM Match : ASC (HMM E-Value=1.8e-07)
          Length = 387

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 238 GIDGFVLGSAITSVLGTFSSLRLSQLLDMYYSP 336
           G +G  +G A TS   T  SLRL+   D YY P
Sbjct: 257 GANGSPIGQATTSGTRTSLSLRLNAESDEYYGP 289


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.130    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,821,528
Number of Sequences: 59808
Number of extensions: 335962
Number of successful extensions: 758
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)