Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30810
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92780-4|CAI46549.1| 642|Caenorhabditis elegans Hypothetical pr... 29 2.9
AL021466-4|CAI46582.1| 642|Caenorhabditis elegans Hypothetical ... 29 2.9
Z81045-2|CAB02814.2| 298|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z47811-4|CAD57701.1| 422|Caenorhabditis elegans Hypothetical pr... 28 5.1
DQ812088-1|ABG89384.1| 530|Caenorhabditis elegans mammalian str... 27 8.9
AC024823-3|AAP40515.1| 395|Caenorhabditis elegans Hypothetical ... 27 8.9
AC024823-2|AAF59596.3| 530|Caenorhabditis elegans Hypothetical ... 27 8.9
AC024823-1|AAL32257.1| 510|Caenorhabditis elegans Hypothetical ... 27 8.9
AC024796-4|AAK29898.3| 539|Caenorhabditis elegans C-terminal sr... 27 8.9
AB096875-1|BAC76831.1| 539|Caenorhabditis elegans CSK-1 protein. 27 8.9
>Z92780-4|CAI46549.1| 642|Caenorhabditis elegans Hypothetical
protein C45G3.5 protein.
Length = 642
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +1
Query: 523 FQTYSTSNLNDLSCVTSIATSLDYRLKTNLYIVLDSSWP 639
F +ST + D C T + ++ ++K++ Y+V++S P
Sbjct: 250 FVIWSTKQMTDSQCKTLVPSNPSRQIKSSRYVVIESLCP 288
>AL021466-4|CAI46582.1| 642|Caenorhabditis elegans Hypothetical
protein C45G3.5 protein.
Length = 642
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +1
Query: 523 FQTYSTSNLNDLSCVTSIATSLDYRLKTNLYIVLDSSWP 639
F +ST + D C T + ++ ++K++ Y+V++S P
Sbjct: 250 FVIWSTKQMTDSQCKTLVPSNPSRQIKSSRYVVIESLCP 288
>Z81045-2|CAB02814.2| 298|Caenorhabditis elegans Hypothetical
protein C36F7.2 protein.
Length = 298
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 169 QAPRHFMIHSRVNIEMTDPEIRGGID 246
Q+ HF+I NIE+ DP+ RG ID
Sbjct: 181 QSLAHFLILQGANIELIDPDGRGIID 206
>Z47811-4|CAD57701.1| 422|Caenorhabditis elegans Hypothetical
protein K02C4.5 protein.
Length = 422
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = -3
Query: 384 FATITCTKSLTKYPIPR*IIHVQQLRQSQRTKSS*N*GYCAAENKAIDASSDFWIGHFYV 205
F ++ C +S P PR H + SQR+ SS + N + +SS+ + F V
Sbjct: 342 FISVECYQSTVPIPSPRTYYHTSDIPSSQRSSSS-----AYSSNYSTSSSSN--VTSFAV 394
Query: 204 DTAVN 190
D N
Sbjct: 395 DNVTN 399
>DQ812088-1|ABG89384.1| 530|Caenorhabditis elegans mammalian
stromal interaction molecule-1 protein.
Length = 530
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 92 RQFLFKELKEAVHQFRSVQQETGTALKRL 178
RQ FKE+KEA+ +Q++ G+ L L
Sbjct: 309 RQDCFKEMKEAIEMVDRLQKKQGSVLSSL 337
>AC024823-3|AAP40515.1| 395|Caenorhabditis elegans Hypothetical
protein Y55B1BM.1c protein.
Length = 395
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 92 RQFLFKELKEAVHQFRSVQQETGTALKRL 178
RQ FKE+KEA+ +Q++ G+ L L
Sbjct: 309 RQDCFKEMKEAIEMVDRLQKKQGSVLSSL 337
>AC024823-2|AAF59596.3| 530|Caenorhabditis elegans Hypothetical
protein Y55B1BM.1a protein.
Length = 530
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 92 RQFLFKELKEAVHQFRSVQQETGTALKRL 178
RQ FKE+KEA+ +Q++ G+ L L
Sbjct: 309 RQDCFKEMKEAIEMVDRLQKKQGSVLSSL 337
>AC024823-1|AAL32257.1| 510|Caenorhabditis elegans Hypothetical
protein Y55B1BM.1b protein.
Length = 510
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 92 RQFLFKELKEAVHQFRSVQQETGTALKRL 178
RQ FKE+KEA+ +Q++ G+ L L
Sbjct: 309 RQDCFKEMKEAIEMVDRLQKKQGSVLSSL 337
>AC024796-4|AAK29898.3| 539|Caenorhabditis elegans C-terminal src
kinase protein 1 protein.
Length = 539
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 121 GSSSISIGTAGNWNSTQAPRHFMIHSRVNIEMTDPEIRGGIDGFVLGSAITSVLGTFS 294
G++S + T+ + +ST A HS ++ E T+ +RG DG L T+ G F+
Sbjct: 130 GAASTTSSTSSH-HSTAANHQPWFHSMISRENTEKLLRGKPDGTFLVRESTNFPGDFT 186
>AB096875-1|BAC76831.1| 539|Caenorhabditis elegans CSK-1 protein.
Length = 539
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 121 GSSSISIGTAGNWNSTQAPRHFMIHSRVNIEMTDPEIRGGIDGFVLGSAITSVLGTFS 294
G++S + T+ + +ST A HS ++ E T+ +RG DG L T+ G F+
Sbjct: 130 GAASTTSSTSSH-HSTAANHQPWFHSMISRENTEKLLRGKPDGTFLVRESTNFPGDFT 186
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.130 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,968,776
Number of Sequences: 27780
Number of extensions: 259824
Number of successful extensions: 635
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -