Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30810
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09090.1 68416.m01069 defective in exine formation protein (D...    31   0.89 
At2g01270.1 68415.m00040 thioredoxin family protein low similari...    30   1.2  
At4g29310.1 68417.m04190 expressed protein                             29   2.1  
At3g48690.1 68416.m05317 expressed protein similar to PrMC3 [Pin...    28   4.8  
At2g05500.1 68415.m00582 expressed protein ; expression supporte...    28   4.8  

>At3g09090.1 68416.m01069 defective in exine formation protein
           (DEX1) identical to defective in exine formation
           [Arabidopsis thaliana] gi|11138669|gb|AAG31444; contains
           Pfam domain PF01839: FG-GAP repeat
          Length = 896

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 34  NVQQTVTSLYPATLSGDLAEAILIQGTERGSSSISIGTAGNWNSTQ 171
           N   T   +  + +SGD  E ++   T  G+SS ++GT+GN ++ +
Sbjct: 277 NRNVTTNEVDQSKISGDKNETVIKLNTSTGNSSETLGTSGNSSTAE 322


>At2g01270.1 68415.m00040 thioredoxin family protein low similarity
           to quiescin [Homo sapiens] GI:13257405; contains Pfam
           profiles PF00085: Thioredoxin, PF04777: Erv1 / Alr
           family
          Length = 495

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 519 QFPNIFY*QFERLKLCYLNSNEPGLQIKNEFVY 617
           +FP I +   E   LCYL+SN+  ++  +E VY
Sbjct: 386 KFPKIIWPPKELCPLCYLSSNQKSIEWDHEHVY 418


>At4g29310.1 68417.m04190 expressed protein
          Length = 424

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 124 SSSISIGTAGNWNSTQAPRHFMIHSRVNIEMTDPEIRGGIDGFVLGSAI 270
           S+S  I  A    ST+    F I  RV+ +   P I   + GFV+GS++
Sbjct: 315 STSTGIPIAEGTMSTKQGGKFSIDRRVSGQGESPAISSPVKGFVMGSSV 363


>At3g48690.1 68416.m05317 expressed protein similar to PrMC3 [Pinus
           radiata] GI:5487873
          Length = 324

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +1

Query: 439 AAALDTNMPLRGTIMGGLEQLVNSAVTNFQTYSTSNLNDLSCVTSIATSLDYRLKTN--L 612
           AA  D+ +PL     GG   +  +    + T+ T++++  +CV   A S+DYR      +
Sbjct: 64  AAETDSKLPLLVYFHGGGFIIETAFSPTYHTFLTTSVSASNCV---AVSVDYRRAPEHPI 120

Query: 613 YIVLDSSW 636
            +  D SW
Sbjct: 121 SVPFDDSW 128


>At2g05500.1 68415.m00582 expressed protein ; expression supported
           by MPSS
          Length = 88

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 583 SLDYRLKTNLYIVLDSSWPYQAVY 654
           S D R+KTNLY  L+ +W  Q+VY
Sbjct: 22  SADRRIKTNLY-ALNKTWHEQSVY 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.130    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,101,051
Number of Sequences: 28952
Number of extensions: 238454
Number of successful extensions: 636
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)