Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30809
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    27   3.6  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    26   4.8  

>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 500 LYSVCKLFREMHGCTAFCKAVFQSVSLFIRYHKINKRETCLHVCE 366
           L SVC++F    G   FC  VF     F  +HK+  +E   +V E
Sbjct: 367 LPSVCRIFLPSPGTVVFC--VFDVT--FAMFHKVRGKEGTFYVEE 407


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = -2

Query: 595 LYEYVCVQYSYRFRYECDAQHYLRKYQTKRWSFTPFASYSEKCMAAQHSAKLYFKVLVYS 416
           LYE +  +  Y+   E  + H L+       S +PFAS+ +K     +S    F+ +VY+
Sbjct: 529 LYEQMRFRDHYQKHVEPSSSH-LQTAAAYENSISPFASFRKKEAERAYSRMGSFERIVYA 587

Query: 415 FVTT 404
            + T
Sbjct: 588 LLRT 591


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,023,090
Number of Sequences: 5004
Number of extensions: 62495
Number of successful extensions: 108
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)