Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30809
(731 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93778-3|CAB07846.1| 446|Caenorhabditis elegans Hypothetical pr... 31 0.84
U56963-12|AAB38128.1| 341|Caenorhabditis elegans Serpentine rec... 29 4.5
AL132948-21|CAC51051.2| 453|Caenorhabditis elegans Hypothetical... 29 4.5
AF024500-5|AAB70362.1| 288|Caenorhabditis elegans Hypothetical ... 29 4.5
Z68316-1|CAA92680.1| 213|Caenorhabditis elegans Hypothetical pr... 28 5.9
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 28 5.9
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 28 5.9
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 28 5.9
U00050-13|AAA50694.2| 298|Caenorhabditis elegans Hypothetical p... 28 7.8
>Z93778-3|CAB07846.1| 446|Caenorhabditis elegans Hypothetical
protein C31H5.6 protein.
Length = 446
Score = 31.1 bits (67), Expect = 0.84
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +1
Query: 355 QYSFSQTCKHVSRLFILW*RMNKLTL*NTALQNAVQPCI-SLNNLQTE*SSIFWFGIF*D 531
Q S+S +H ++ + +KL NT L A PC +L + TE +SI W I +
Sbjct: 268 QCSYSLLKEHGKQMIVPELDDSKLYFLNTILVTA--PCFKTLTPILTEENSIPWHWIPKE 325
Query: 532 SVVRRIRSETDNCIVHIHTRIN 597
+ R I S D C IH+ ++
Sbjct: 326 TAFRLIGSVDDLCAPSIHSNLH 347
>U56963-12|AAB38128.1| 341|Caenorhabditis elegans Serpentine
receptor, class v protein33 protein.
Length = 341
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/71 (22%), Positives = 35/71 (49%)
Frame = +3
Query: 315 IYHYTFRTKEQYVSVFLFTNVQARFAFIYLVVTNE*TNTLKYSFAECCAAMHFSE*LANG 494
I + F + Y++ + ++ + F+Y+ T +L+ F CC + F+ + N
Sbjct: 81 IREFFFNYQSFYIAAASYNSI---YYFLYIRCTGIIFLSLQRYFVICCPMLQFTYKIQNA 137
Query: 495 VKLHLLVWYFL 527
KL ++V Y++
Sbjct: 138 SKLTIVVIYWI 148
>AL132948-21|CAC51051.2| 453|Caenorhabditis elegans Hypothetical
protein Y39B6A.29 protein.
Length = 453
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 488 KRSKAPSFGLVFSEIVLCVAFVAKPITVLYTYILV*IIGFLVA 616
+R++A S ++ + CV F A PI LY Y + I ++A
Sbjct: 392 RRAQAFSISKLYQALGSCVLFFASPIIPLYVYTIGVSIHLIIA 434
>AF024500-5|AAB70362.1| 288|Caenorhabditis elegans Hypothetical
protein K06H6.2 protein.
Length = 288
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 491 VCKLFREMHGCTAFCKAVFQSVSLF-IRYHKINKRETCLHVCEKEY*NVLFFCTKGIM 321
VC++F E+HG A ++ + +S + R + + C+ CE N L G++
Sbjct: 220 VCQIFIEVHGTPAEHLSMLRMMSKYGFRLFSLEENPYCVRCCEYSLINELCMAQFGVV 277
>Z68316-1|CAA92680.1| 213|Caenorhabditis elegans Hypothetical
protein K08E4.2 protein.
Length = 213
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 576 YNTVIGFATNATHNTISENTKPKDGALLRLQVIQR 472
Y T+IG AT + N N KP L V+ R
Sbjct: 75 YRTIIGMATKESENGTIRNQKPNRSGTGHLMVLNR 109
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +2
Query: 509 FGLVFSEIVLCVAFVAKPIT--VLYTYILV*IIGFLVALAMKLHYRSFVT*FMLSWHLIL 682
F L+ +EI+ + I +L+T ++V + + +++ LH+R+ T M +W +
Sbjct: 302 FFLLLTEIIPATSITLPLIGKYLLFTMVMVTLSVVVTVISLNLHFRTPTTHLMPNWVKKV 361
Query: 683 NSKWI 697
KW+
Sbjct: 362 FLKWL 366
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +2
Query: 509 FGLVFSEIVLCVAFVAKPIT--VLYTYILV*IIGFLVALAMKLHYRSFVT*FMLSWHLIL 682
F L+ +EI+ + I +L+T ++V + + +++ LH+R+ T M +W +
Sbjct: 302 FFLLLTEIIPATSITLPLIGKYLLFTMVMVTLSVVVTVISLNLHFRTPTTHLMPNWVKKV 361
Query: 683 NSKWI 697
KW+
Sbjct: 362 FLKWL 366
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +2
Query: 509 FGLVFSEIVLCVAFVAKPIT--VLYTYILV*IIGFLVALAMKLHYRSFVT*FMLSWHLIL 682
F L+ +EI+ + I +L+T ++V + + +++ LH+R+ T M +W +
Sbjct: 302 FFLLLTEIIPATSITLPLIGKYLLFTMVMVTLSVVVTVISLNLHFRTPTTHLMPNWVKKV 361
Query: 683 NSKWI 697
KW+
Sbjct: 362 FLKWL 366
>U00050-13|AAA50694.2| 298|Caenorhabditis elegans Hypothetical
protein F09F7.1 protein.
Length = 298
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 294 GNALILAIYHYTFRTKEQYVS 356
GN L+L IYH T T Q+ S
Sbjct: 3 GNVLLLLIYHITLATSSQWTS 23
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,483,028
Number of Sequences: 27780
Number of extensions: 342272
Number of successful extensions: 693
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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