Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30809
(731 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 25 0.73
L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein pro... 23 2.2
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 23 2.2
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 23 3.0
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 23 3.9
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 23 3.9
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 23 3.9
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 23 3.9
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 23 3.9
DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 22 5.2
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 6.8
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 22 6.8
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 21 9.0
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 25.0 bits (52), Expect = 0.73
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +2
Query: 509 FGLVFSEIVLCVAFVAKPIT---VLYTYILV*IIGFLVALAMKLHYRSFVT*FMLSW 670
F L+ SEI+ + +A P+ +L+T ILV + + + + +HYR T M W
Sbjct: 280 FFLLISEIIPSTS-LALPLLGKYLLFTMILVGLSVVITIVILNVHYRKPSTHKMAPW 335
>L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein
protein.
Length = 69
Score = 23.4 bits (48), Expect = 2.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 595 LYEYVCVQYSYRFRYECDAQHYLRKY 518
+Y+Y C +Y +Y + +LRKY
Sbjct: 42 VYQYRCANCTYATKYCHSLKLHLRKY 67
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 23.4 bits (48), Expect = 2.2
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = -2
Query: 583 VCVQYSYRFRYECDAQHYLRKYQTKRWSFTPFASYSEKCMAAQHSAKLYF 434
VCV S R YEC Y + + +S P S A SA +F
Sbjct: 106 VCVAISSRMEYECSRIDY---FPNEEYSPDPSDSTMAIPYAVTKSAMFFF 152
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 23.0 bits (47), Expect = 3.0
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +2
Query: 509 FGLVFSEIV----LCVAFVAKPITVLYTYILV*IIGFLVALAMKLHYRSFVT*FMLSW 670
F L+ +EI+ L + + K + L+T ILV + ++ + +H+RS T M W
Sbjct: 294 FFLLLAEIIPPTSLAIPLLGKYL--LFTMILVTLSIWITVCVLNVHFRSPSTHNMSPW 349
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 22.6 bits (46), Expect = 3.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 78 NSRNVKGIYFNNNVDIN*HCISYNAN 155
N+ N K Y NNN + N + YN N
Sbjct: 92 NNNNYKYNYNNNNYNNNCKKLYYNIN 117
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 3.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 78 NSRNVKGIYFNNNVDIN*HCISYNAN 155
N+ N K Y NNN + N + YN N
Sbjct: 92 NNNNYKYNYNNNNYNNNCKKLYYNIN 117
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 3.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 78 NSRNVKGIYFNNNVDIN*HCISYNAN 155
N+ N K Y NNN + N + YN N
Sbjct: 92 NNNNYKYNYNNNNYNNNCKKLYYNIN 117
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 3.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 78 NSRNVKGIYFNNNVDIN*HCISYNAN 155
N+ N K Y NNN + N + YN N
Sbjct: 92 NNNNYKYNYNNNNYNNNCKKLYYNIN 117
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 22.6 bits (46), Expect = 3.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 78 NSRNVKGIYFNNNVDIN*HCISYNAN 155
N+ N K Y NNN + N + +YN N
Sbjct: 325 NNNNYKYNYNNNNYNNNNYNNNYNNN 350
>DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.2 bits (45), Expect = 5.2
Identities = 5/16 (31%), Positives = 11/16 (68%)
Frame = +1
Query: 334 VQKNNTFQYSFSQTCK 381
+ NN ++Y+++ CK
Sbjct: 90 IHNNNNYKYNYNNNCK 105
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 21.8 bits (44), Expect = 6.8
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 509 FGLVFSEIVLCVAFVAKPIT--VLYTYILV*IIGFLVALAMKLHYRSFVT*FMLSW 670
F L+ +EI+ + V + VL+T IL + + + +H+RS T M W
Sbjct: 285 FFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNVHFRSPQTHVMAPW 340
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.8 bits (44), Expect = 6.8
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -1
Query: 125 NIYIVIEINTFNVSGIPLDESLNIYCMHY 39
N Y + N N+ IP+ + IYC ++
Sbjct: 347 NNYKKLYYNIINIEQIPVPVPVPIYCGNF 375
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 21.4 bits (43), Expect = 9.0
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +2
Query: 509 FGLVFSEIV----LCVAFVAKPITVLYTYILV*IIGFLVALAMKLHYRSFVT*FMLSW 670
F L+ +EI+ L V + K + L+T +LV + + + +++RS VT M W
Sbjct: 281 FFLLLAEIIPPTSLTVPLLGKYL--LFTMVLVTLSVVVTIAVLNVNFRSPVTHRMARW 336
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,103
Number of Sequences: 438
Number of extensions: 4370
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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