BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30809 (731 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 25 0.73 L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein pro... 23 2.2 DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 23 2.2 AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 23 3.0 DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 23 3.9 DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 23 3.9 DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 23 3.9 DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 23 3.9 AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 23 3.9 DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 22 5.2 DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 6.8 AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 22 6.8 DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 21 9.0 >AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic acetylcholine receptorApisa2 subunit protein. Length = 541 Score = 25.0 bits (52), Expect = 0.73 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Frame = +2 Query: 509 FGLVFSEIVLCVAFVAKPIT---VLYTYILV*IIGFLVALAMKLHYRSFVT*FMLSW 670 F L+ SEI+ + +A P+ +L+T ILV + + + + +HYR T M W Sbjct: 280 FFLLISEIIPSTS-LALPLLGKYLLFTMILVGLSVVITIVILNVHYRKPSTHKMAPW 335 >L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein protein. Length = 69 Score = 23.4 bits (48), Expect = 2.2 Identities = 9/26 (34%), Positives = 15/26 (57%) Frame = -2 Query: 595 LYEYVCVQYSYRFRYECDAQHYLRKY 518 +Y+Y C +Y +Y + +LRKY Sbjct: 42 VYQYRCANCTYATKYCHSLKLHLRKY 67 >DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related protein STG-1 protein. Length = 397 Score = 23.4 bits (48), Expect = 2.2 Identities = 16/50 (32%), Positives = 20/50 (40%) Frame = -2 Query: 583 VCVQYSYRFRYECDAQHYLRKYQTKRWSFTPFASYSEKCMAAQHSAKLYF 434 VCV S R YEC Y + + +S P S A SA +F Sbjct: 106 VCVAISSRMEYECSRIDY---FPNEEYSPDPSDSTMAIPYAVTKSAMFFF 152 >AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic acetylcholine receptoralpha-3 protein. Length = 537 Score = 23.0 bits (47), Expect = 3.0 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Frame = +2 Query: 509 FGLVFSEIV----LCVAFVAKPITVLYTYILV*IIGFLVALAMKLHYRSFVT*FMLSW 670 F L+ +EI+ L + + K + L+T ILV + ++ + +H+RS T M W Sbjct: 294 FFLLLAEIIPPTSLAIPLLGKYL--LFTMILVTLSIWITVCVLNVHFRSPSTHNMSPW 349 >DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex determiner protein. Length = 186 Score = 22.6 bits (46), Expect = 3.9 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +3 Query: 78 NSRNVKGIYFNNNVDIN*HCISYNAN 155 N+ N K Y NNN + N + YN N Sbjct: 92 NNNNYKYNYNNNNYNNNCKKLYYNIN 117 >DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex determiner protein. Length = 184 Score = 22.6 bits (46), Expect = 3.9 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +3 Query: 78 NSRNVKGIYFNNNVDIN*HCISYNAN 155 N+ N K Y NNN + N + YN N Sbjct: 92 NNNNYKYNYNNNNYNNNCKKLYYNIN 117 >DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex determiner protein. Length = 184 Score = 22.6 bits (46), Expect = 3.9 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +3 Query: 78 NSRNVKGIYFNNNVDIN*HCISYNAN 155 N+ N K Y NNN + N + YN N Sbjct: 92 NNNNYKYNYNNNNYNNNCKKLYYNIN 117 >DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex determiner protein. Length = 184 Score = 22.6 bits (46), Expect = 3.9 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +3 Query: 78 NSRNVKGIYFNNNVDIN*HCISYNAN 155 N+ N K Y NNN + N + YN N Sbjct: 92 NNNNYKYNYNNNNYNNNCKKLYYNIN 117 >AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex determiner protein. Length = 428 Score = 22.6 bits (46), Expect = 3.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +3 Query: 78 NSRNVKGIYFNNNVDIN*HCISYNAN 155 N+ N K Y NNN + N + +YN N Sbjct: 325 NNNNYKYNYNNNNYNNNNYNNNYNNN 350 >DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex determiner protein. Length = 179 Score = 22.2 bits (45), Expect = 5.2 Identities = 5/16 (31%), Positives = 11/16 (68%) Frame = +1 Query: 334 VQKNNTFQYSFSQTCK 381 + NN ++Y+++ CK Sbjct: 90 IHNNNNYKYNYNNNCK 105 >DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine receptor alpha3subunit protein. Length = 566 Score = 21.8 bits (44), Expect = 6.8 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Frame = +2 Query: 509 FGLVFSEIVLCVAFVAKPIT--VLYTYILV*IIGFLVALAMKLHYRSFVT*FMLSW 670 F L+ +EI+ + V + VL+T IL + + + +H+RS T M W Sbjct: 285 FFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNVHFRSPQTHVMAPW 340 >AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex determiner protein. Length = 426 Score = 21.8 bits (44), Expect = 6.8 Identities = 9/29 (31%), Positives = 15/29 (51%) Frame = -1 Query: 125 NIYIVIEINTFNVSGIPLDESLNIYCMHY 39 N Y + N N+ IP+ + IYC ++ Sbjct: 347 NNYKKLYYNIINIEQIPVPVPVPIYCGNF 375 >DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine receptor alpha1subunit protein. Length = 601 Score = 21.4 bits (43), Expect = 9.0 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Frame = +2 Query: 509 FGLVFSEIV----LCVAFVAKPITVLYTYILV*IIGFLVALAMKLHYRSFVT*FMLSW 670 F L+ +EI+ L V + K + L+T +LV + + + +++RS VT M W Sbjct: 281 FFLLLAEIIPPTSLTVPLLGKYL--LFTMVLVTLSVVVTIAVLNVNFRSPVTHRMARW 336 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 203,103 Number of Sequences: 438 Number of extensions: 4370 Number of successful extensions: 15 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 15 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 22779405 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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