BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30808 (740 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 8.6 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.6 SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 25 8.6 SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 8.6 >SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual Length = 309 Score = 25.4 bits (53), Expect = 8.6 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +2 Query: 266 AALSQPNPVSQLPMCSIPPVSATAGFPQLPEANVINTSHRAALQHANATSCGYFVSQDSS 445 A + P LP ++PP+ P L +A V NTS R + A S+ Sbjct: 179 APVKSPPSAPSLPS-AVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPK 237 Query: 446 FGNQ 457 F N+ Sbjct: 238 FPNR 241 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 25.4 bits (53), Expect = 8.6 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Frame = +2 Query: 263 TAALSQPNPVSQLPMC-SIPPVSATAGFPQLPEANVINTSHRAALQHANATSCGYFVSQD 439 T+ P S P+ ++PP S ++ P A+ +T ++ + +TSC S Sbjct: 287 TSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIP 346 Query: 440 SSFGNQILPVLP 475 + GN PV P Sbjct: 347 PT-GNSTTPVTP 357 >SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1191 Score = 25.4 bits (53), Expect = 8.6 Identities = 10/37 (27%), Positives = 20/37 (54%) Frame = -1 Query: 488 CSQNEVKLVEFDFQMRNPEIQNNHKMLRWRAGVQLYD 378 C N V+ + DF+ R ++ + +L G+++YD Sbjct: 449 CFVNGVESINVDFEARIFDVSGDRLVLAGNGGLRVYD 485 >SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccharomyces pombe|chr 1|||Manual Length = 4196 Score = 25.4 bits (53), Expect = 8.6 Identities = 18/55 (32%), Positives = 25/55 (45%) Frame = +1 Query: 259 VNSSPESAKSCQSTSYVFHPTSFGNSWFSSTS*SKCDKY*S*SCTPARQRNILWL 423 + SSP S SC + F TS FS TS K + TP +N+L++ Sbjct: 71 LTSSPTSPDSCTFGNMTFQWTSLLQDVFSGTSAFAIFKRFPLTDTPLTLQNMLYI 125 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,156,498 Number of Sequences: 5004 Number of extensions: 66000 Number of successful extensions: 213 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 202 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 213 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 351258950 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -