Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30808
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   8.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.6  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   8.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.6  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 18/64 (28%), Positives = 26/64 (40%)
 Frame = +2

Query: 266 AALSQPNPVSQLPMCSIPPVSATAGFPQLPEANVINTSHRAALQHANATSCGYFVSQDSS 445
           A +  P     LP  ++PP+      P L +A V NTS R +     A       S+   
Sbjct: 179 APVKSPPSAPSLPS-AVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPK 237

Query: 446 FGNQ 457
           F N+
Sbjct: 238 FPNR 241


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +2

Query: 263 TAALSQPNPVSQLPMC-SIPPVSATAGFPQLPEANVINTSHRAALQHANATSCGYFVSQD 439
           T+    P   S  P+  ++PP S ++     P A+  +T   ++   + +TSC    S  
Sbjct: 287 TSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIP 346

Query: 440 SSFGNQILPVLP 475
            + GN   PV P
Sbjct: 347 PT-GNSTTPVTP 357


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 488 CSQNEVKLVEFDFQMRNPEIQNNHKMLRWRAGVQLYD 378
           C  N V+ +  DF+ R  ++  +  +L    G+++YD
Sbjct: 449 CFVNGVESINVDFEARIFDVSGDRLVLAGNGGLRVYD 485


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +1

Query: 259 VNSSPESAKSCQSTSYVFHPTSFGNSWFSSTS*SKCDKY*S*SCTPARQRNILWL 423
           + SSP S  SC   +  F  TS     FS TS     K    + TP   +N+L++
Sbjct: 71  LTSSPTSPDSCTFGNMTFQWTSLLQDVFSGTSAFAIFKRFPLTDTPLTLQNMLYI 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,156,498
Number of Sequences: 5004
Number of extensions: 66000
Number of successful extensions: 213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)