Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30808
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1356 - 26348953-26350062 31 1.3
07_01_0121 - 924306-925838 29 3.9
12_02_0674 - 21745321-21746223,21746229-21747608 28 6.8
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003... 28 6.8
01_01_0471 - 3467275-3467351,3467526-3467895,3468258-3468555,346... 28 6.8
10_01_0267 - 2828966-2829340,2831164-2831629,2833390-2833487,283... 28 9.0
06_03_0606 - 22689935-22689998,22690716-22691159,22691669-226920... 28 9.0
06_01_0446 - 3147007-3147111,3147215-3147367,3147445-3147497,314... 28 9.0
>08_02_1356 - 26348953-26350062
Length = 369
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +2
Query: 266 AALSQPNPVSQLPMCSIPPVSATAGFPQLPEANVINTSHRAALQHANATSCGYFVSQDSS 445
AAL P +QLP+ + P G P+ + R A ++ G + +D++
Sbjct: 118 AALPVPRREAQLPLLAFDPADGGGGSPRYHVVCFVAWQERGATVDVFSSETGAWAERDAA 177
Query: 446 FG 451
FG
Sbjct: 178 FG 179
>07_01_0121 - 924306-925838
Length = 510
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -1
Query: 560 LLKPFRSCRWPSKVFSFINAVIITCSQNEVKLVEF-DFQMRNPEIQNNHKMLRWRAGVQL 384
+L +++C P+ + N+ S+ EV + F DFQ N Q K+L WR+ +
Sbjct: 419 ILHDYQTCSVPNMLHRCTNSAQ---SEVEVPQLSFEDFQFGNVRPQGKFKVLGWRSHLPP 475
Query: 383 YD*YL 369
Y Y+
Sbjct: 476 YHDYM 480
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +1
Query: 253 CSVNSSPESAKSCQSTSYVFHPTSFGNSWFSSTS 354
C V+S + K STS F PTSF N +STS
Sbjct: 698 CKVSSPTGACKFSTSTS-TFTPTSFSNDLTASTS 730
>02_05_0046 -
25398412-25398594,25399022-25399060,25399896-25400360,
25400758-25400816,25400920-25401748,25402554-25402898,
25402973-25403435,25403537-25403640,25403692-25403901,
25404933-25405088,25405774-25406052,25406237-25406986,
25407141-25407232,25407977-25408361,25408672-25408752,
25409196-25409354,25409399-25409506,25409604-25409666,
25409764-25409835,25409932-25410366
Length = 1758
Score = 28.3 bits (60), Expect = 6.8
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +2
Query: 260 LTAALSQPNPVSQLPMCSIPPVSATAGFPQLPEANVINTSHRAALQH--ANATSCGYFVS 433
LTA L++P+ S P CS+P VS + L V+ T R LQ NA+ G
Sbjct: 790 LTAGLAEPS--SAFPGCSVPEVSHPRSWSSL---RVMTTEQRLELQQRIMNASENGKLPF 844
Query: 434 QD 439
+D
Sbjct: 845 RD 846
>01_01_0471 -
3467275-3467351,3467526-3467895,3468258-3468555,
3468680-3469734,3469823-3470467
Length = 814
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -3
Query: 618 QSNCSNMSGCLVLLKFNFW 562
QS+ SN++GCL+LL+F W
Sbjct: 416 QSDGSNLTGCLLLLQFWSW 434
>10_01_0267 -
2828966-2829340,2831164-2831629,2833390-2833487,
2833782-2834078,2834287-2834694
Length = 547
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 257 PLTAALSQPNPVSQLPMCSIPPVSATA 337
P AALS P ++ P +PP ++TA
Sbjct: 486 PAAAALSPPGAIAPAPASMLPPFNSTA 512
>06_03_0606 -
22689935-22689998,22690716-22691159,22691669-22692057,
22692130-22692223,22692507-22692599,22692705-22692913,
22692999-22693833,22693948-22694038,22698069-22698892,
22699384-22700489,22701353-22701415
Length = 1403
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 624 CVQSNCSNMSGCLVLLKFNFW 562
C Q+ SNMSGC++L++ W
Sbjct: 893 CRQAPSSNMSGCVLLIQLWMW 913
>06_01_0446 -
3147007-3147111,3147215-3147367,3147445-3147497,
3147670-3147988,3148754-3148892,3149141-3149222,
3149711-3149789,3150135-3150314,3150811-3151070,
3151192-3151294,3151469-3151609,3151797-3151870,
3153536-3153635,3154108-3154167,3154381-3154428,
3154519-3154610,3155023-3155071,3155810-3155879,
3156408-3156505,3157288-3157347
Length = 754
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 508 MKLKTLEGHLQDLKGFSKPK 567
MKLK LEG L DL+ F+ PK
Sbjct: 1 MKLKQLEGLLGDLQQFTAPK 20
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,793,949
Number of Sequences: 37544
Number of extensions: 409767
Number of successful extensions: 1110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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