Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30808
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53350| Best HMM Match : MTS (HMM E-Value=0.00021)                   70   2e-12
SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07)               29   3.0  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_53350| Best HMM Match : MTS (HMM E-Value=0.00021)
          Length = 211

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 33/66 (50%), Positives = 41/66 (62%)
 Frame = +1

Query: 508 MKLKTLEGHLQDLKGFSKPKIKFEQYETPAHIAAIALYTIQTQFGDLEDKLILDAGLWPW 687
           M+LK LEG+LQ +  F KPK+  EQY T AHIA+  LYT+   FGD+E KL+ D G    
Sbjct: 1   MRLKELEGYLQQVDVFEKPKVHLEQYPTTAHIASHLLYTVGQTFGDIEGKLVADLGCGCG 60

Query: 688 KSEYGC 705
               GC
Sbjct: 61  VLSVGC 66


>SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2047

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -3

Query: 375  VFITFASGS*GKPAVAETGGMEHIGS*LTGFG*LRAAVNGATAPCFKSICFFNCRS 208
            + ITF     GKP +  +G M  + S  +  G     V     P FK++   NCRS
Sbjct: 1992 IAITFLGSGGGKPDMPVSGFMRDVLSMPSDLGLRNRKVTMLKKPAFKTLQMPNCRS 2047


>SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07)
          Length = 505

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +2

Query: 245 GAVAPLTAALSQPNPVSQLPMCSIPPVSATAGFPQLPEANVINTSHRAALQHANATSCGY 424
           G V+PL +        S++P+   PP  A A F  LP A    + H+  ++  + T+  Y
Sbjct: 52  GPVSPLHSPKPHMANKSKMPVAQPPPAQAQA-FEFLPSATNQPSHHQQHIESIDGTT--Y 108

Query: 425 FVSQDS 442
           F SQ +
Sbjct: 109 FYSQQN 114


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -2

Query: 406  VGVLECSSMTSIYHICFRKLRKTSCCRNWWDGTHRKL 296
            +G L C   T I  I  +K       R WWD T  KL
Sbjct: 2148 LGNLNCEWQTLIQEIEGQKKSIEKTARKWWDFTRNKL 2184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,114,466
Number of Sequences: 59808
Number of extensions: 473521
Number of successful extensions: 1082
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)