Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30808
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46241-7|CAA86320.1|  214|Caenorhabditis elegans Hypothetical pr...    41   0.001
AF067222-3|AAC17019.1|  292|Caenorhabditis elegans Hypothetical ...    29   3.5  
U39472-8|AAP86618.1|  338|Caenorhabditis elegans Serpentine rece...    28   8.0  

>Z46241-7|CAA86320.1|  214|Caenorhabditis elegans Hypothetical
           protein C38D4.9 protein.
          Length = 214

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 20/47 (42%), Positives = 27/47 (57%)
 Frame = +1

Query: 535 LQDLKGFSKPKIKFEQYETPAHIAAIALYTIQTQFGDLEDKLILDAG 675
           L +L+GF KPKIK EQY T + +A   +  I    G  E K ++D G
Sbjct: 10  LNELEGFEKPKIKLEQYATSSELAVSMMEMIDETIG-FEGKKLIDIG 55


>AF067222-3|AAC17019.1|  292|Caenorhabditis elegans Hypothetical
           protein H11E01.1 protein.
          Length = 292

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 13  QSCNVIFLFVKSKLLTN*ILFQTSYLKT-HRFLKHYMLSPNSYLETLDGV 159
           Q+C+V  L + S    N  L++ +  K  + FLKH+M   N  LE L+ +
Sbjct: 190 QTCSVSNLLIVSTNSENVTLWEPNTAKDLNLFLKHWMQGSNGRLERLEAI 239


>U39472-8|AAP86618.1|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 32 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = -3

Query: 699 ILRFPGPQPGI*NKFIFQISKLCLNCVQSNCSN---MSGCLVLLKF-NFWFT 556
           +L   GP PGI     F+ + + +N   +N ++   +S C   L F   W+T
Sbjct: 169 LLHLKGPHPGIVTTSCFRETDITINLCSTNLTSYTILSACCAALDFLMMWYT 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,466,545
Number of Sequences: 27780
Number of extensions: 377164
Number of successful extensions: 1045
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)