Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30808
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28830.1 68417.m04121 expressed protein                             67   1e-11
At4g33100.1 68417.m04716 expressed protein contains Pfam PF05254...    29   2.4  
At5g04980.1 68418.m00527 endonuclease/exonuclease/phosphatase fa...    28   7.5  
At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase, p...    28   7.5  
At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp...    28   7.5  
At5g23150.1 68418.m02707 PWWP domain-containing protein identica...    27   9.9  

>At4g28830.1 68417.m04121 expressed protein
          Length = 208

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 30/56 (53%), Positives = 40/56 (71%)
 Frame = +1

Query: 508 MKLKTLEGHLQDLKGFSKPKIKFEQYETPAHIAAIALYTIQTQFGDLEDKLILDAG 675
           MKLK LEG L DL+ FS PK++FEQY T  HIA+  L+T +  +GD+ DK++ D G
Sbjct: 1   MKLKQLEGLLGDLEQFSNPKVEFEQYPTGPHIASRMLFTAENSYGDITDKVVADFG 56


>At4g33100.1 68417.m04716 expressed protein contains Pfam PF05254:
           Uncharacterised protein family (UPF0203)
          Length = 92

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -2

Query: 442 GILRYKITTRCCVGVLECSSMTSIYHICFRKLRKTSCCRNWWD 314
           G+L+ K +T        C+ + + YH CF K       +  WD
Sbjct: 2   GLLKKKDSTSARSSTSPCADLRNAYHNCFNKWYSEKFVKGQWD 44


>At5g04980.1 68418.m00527 endonuclease/exonuclease/phosphatase
           family protein contains similarity to inositol
           polyphosphate 5-phosphatase I (GI:10444261) and II
           (GI:10444263) [Arabidopsis thaliana]; contains Pfam
           profile PF03372: Endonuclease/Exonuclease/phosphatase
           family
          Length = 437

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 606 CNCSVHNSNTIWRFGR*TYFRC 671
           CNCS  + + + ++GR + FRC
Sbjct: 125 CNCSTFSEDIVRKYGRESCFRC 146


>At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 580

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 371 NTSHRAALQHANATSCGYFVSQDSSFGNQILPVLP 475
           NT+  A LQ+ +A  CG      +  GN   P++P
Sbjct: 300 NTTTTAILQYKSAPCCGVGGGSGTKKGNSFKPIMP 334


>At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein similar to human splicing
           factor GB:CAA59494 GI:899298 from [Homo sapiens];
           contains Pfam profile PF01805: Surp module
          Length = 735

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 245 GAVAPLTAALSQPNPVSQLPMCSIPPVSATAGFPQLPE 358
           G + PL+  + QP P++++P    PP  A    P+ PE
Sbjct: 629 GQLPPLSMGMMQPPPMAEMPP-PPPPGEAPPPLPEEPE 665


>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
            cDNA putative transcription factor (HUA2) GI:4868119;
            contains Pfam profile  PF00855:  PWWP domain
          Length = 1392

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 275  SQPNPVSQLPMCSIPPVSATAGFPQLP 355
            S P P   LP  S+PP    A FP LP
Sbjct: 1078 SPPPPSPPLPPSSLPPPPPAALFPPLP 1104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,273,785
Number of Sequences: 28952
Number of extensions: 340753
Number of successful extensions: 898
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)