Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30807
         (669 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    32   0.005
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    32   0.005
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    32   0.005
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    32   0.005
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    28   0.080
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    28   0.080
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    28   0.080
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    28   0.080
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   0.98 
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   2.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.2  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   6.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   6.9  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   9.1  

>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 31.9 bits (69), Expect = 0.005
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -3

Query: 259 YITIVRILGPRVSFYHPMRAGGFVWWSRGHSNVSHWGEWRYQQRIAC 119
           Y+   + LG      HP+ +GG VW+      V HW +   +  I C
Sbjct: 177 YMKKNKTLGAACGRIHPIGSGGMVWYQMFEYAVGHWMQKATEHVIGC 223


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 31.9 bits (69), Expect = 0.005
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -3

Query: 259 YITIVRILGPRVSFYHPMRAGGFVWWSRGHSNVSHWGEWRYQQRIAC 119
           Y+   + LG      HP+ +GG VW+      V HW +   +  I C
Sbjct: 491 YMKKNKTLGAACGRIHPIGSGGMVWYQMFEYAVGHWMQKATEHVIGC 537


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 31.9 bits (69), Expect = 0.005
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -3

Query: 259 YITIVRILGPRVSFYHPMRAGGFVWWSRGHSNVSHWGEWRYQQRIAC 119
           Y+   + LG      HP+ +GG VW+      V HW +   +  I C
Sbjct: 724 YMKKNKTLGAACGRIHPIGSGGMVWYQMFEYAVGHWMQKATEHVIGC 770


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 31.9 bits (69), Expect = 0.005
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -3

Query: 259 YITIVRILGPRVSFYHPMRAGGFVWWSRGHSNVSHWGEWRYQQRIAC 119
           Y+   + LG      HP+ +GG VW+      V HW +   +  I C
Sbjct: 724 YMKKNKTLGAACGRIHPIGSGGMVWYQMFEYAVGHWMQKATEHVIGC 770


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 27.9 bits (59), Expect = 0.080
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -3

Query: 244 RILGPRVSFYHPMRAGGFVWWSRGHSNVSHWGEWRYQQRIAC 119
           R LG      HP+ +G  VW+      + HW +   +  I C
Sbjct: 756 RNLGAACGRIHPVGSGPMVWYQMFEYAIGHWLQKATEHVIGC 797


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 27.9 bits (59), Expect = 0.080
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -3

Query: 244 RILGPRVSFYHPMRAGGFVWWSRGHSNVSHWGEWRYQQRIAC 119
           R LG      HP+ +G  VW+      + HW +   +  I C
Sbjct: 756 RNLGAACGRIHPVGSGPMVWYQMFEYAIGHWLQKATEHVIGC 797


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 27.9 bits (59), Expect = 0.080
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -3

Query: 244 RILGPRVSFYHPMRAGGFVWWSRGHSNVSHWGEWRYQQRIAC 119
           R LG      HP+ +G  VW+      + HW +   +  I C
Sbjct: 756 RNLGAACGRIHPVGSGPMVWYQMFEYAIGHWLQKATEHVIGC 797


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 27.9 bits (59), Expect = 0.080
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -3

Query: 244 RILGPRVSFYHPMRAGGFVWWSRGHSNVSHWGEWRYQQRIAC 119
           R LG      HP+ +G  VW+      + HW +   +  I C
Sbjct: 756 RNLGAACGRIHPVGSGPMVWYQMFEYAIGHWLQKATEHVIGC 797


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
 Frame = -1

Query: 606 SLPLNPQAYAPTIIPMKIILFSHPLV*VVRSKSHCAEGRMNDIEMTSISSEVLTRPHTAN 427
           SLP NP  + P ++P+     S P              ++N+  + S +++ +  P    
Sbjct: 49  SLPTNPAFFHPGLLPLAWQANSPPSPPAPSELPALKSRKLNNNNVVSSTNQEIRGPKRKT 108

Query: 426 SM*WK----RPYPVSSIARSKSAFSELEPFS 346
              WK     P P SS++      S   PF+
Sbjct: 109 ---WKVEEDSPSPTSSVSPEVKDSSRDRPFT 136


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 384 RSKSAFSELEPFSGSDFDFLTEGTTPSS 301
           RS SAFS ++P S  D+  + +  +P+S
Sbjct: 149 RSSSAFSYIKPSSERDYFSVKKLPSPAS 176


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 502  TVRLRPHHSD*RMAKQYNLH 561
            T +L+PH SD      Y +H
Sbjct: 1413 TFKLKPHESDVEPIHGYTIH 1432


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 595 EPPSVRAHHHTDEDYTV 545
           EPP +  +H T E YTV
Sbjct: 116 EPPRICYYHFTLELYTV 132


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 595 EPPSVRAHHHTDEDYTV 545
           EPP +  +H T E YTV
Sbjct: 116 EPPRICYYHFTLELYTV 132


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 236 KNPHNCDVK 262
           KNP+ CD+K
Sbjct: 220 KNPNGCDIK 228


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,517
Number of Sequences: 336
Number of extensions: 3744
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)