Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30807
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20443| Best HMM Match : Sugar_tr (HMM E-Value=3.5)                  40   0.001
SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7)                    33   0.21 
SB_40645| Best HMM Match : zf-C2H2 (HMM E-Value=3.30006e-42)           29   3.4  
SB_30134| Best HMM Match : Lectin_C (HMM E-Value=5.4e-05)              29   4.5  
SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23)              29   4.5  
SB_52873| Best HMM Match : Oleosin (HMM E-Value=3)                     28   6.0  
SB_32414| Best HMM Match : Osteopontin (HMM E-Value=2.4)               28   7.9  
SB_15303| Best HMM Match : Orexin_rec2 (HMM E-Value=6)                 28   7.9  
SB_12953| Best HMM Match : Defensin_2 (HMM E-Value=3.6)                28   7.9  

>SB_20443| Best HMM Match : Sugar_tr (HMM E-Value=3.5)
          Length = 563

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/74 (24%), Positives = 37/74 (50%)
 Frame = +2

Query: 341 DPEKGSNSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDL 520
           D EK         E AI+  GYG F   LL + G    ++ M++  ++ + P+ +C+ +L
Sbjct: 40  DQEKEDKELTYTVEDAIDRLGYGLFQIKLLLMIGFAWMADSMEITILAIMCPAIRCEWNL 99

Query: 521 TTQTKGWLNSIIFI 562
           +T  +  + ++  +
Sbjct: 100 STWAEALITTVTLL 113


>SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7)
          Length = 608

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +2

Query: 353 GSNSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLT 523
           G  S       A+E  GYG +   L  +      ++ M++  +S ++P  +C+ DL+
Sbjct: 79  GKTSPTFTVSDAVESAGYGWYQLRLGIISSFQRVADAMEITMLSILVPYVKCEWDLS 135


>SB_40645| Best HMM Match : zf-C2H2 (HMM E-Value=3.30006e-42)
          Length = 554

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +2

Query: 251 CDVKGDLQLNGPGSKTAELGVVPSVKKSKSDPEKGSNSEKAD 376
           CD K  L  NGP     E G      +  S PE+  N +KAD
Sbjct: 300 CDKKALLLRNGPVMTREEGGKSVESHRKGSSPERVENEDKAD 341


>SB_30134| Best HMM Match : Lectin_C (HMM E-Value=5.4e-05)
          Length = 131

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 399 PDMAASTTCCWQYAVSSALPRRWTSSRCRSSY 494
           PD +     C  + +S  L RRW    C +SY
Sbjct: 89  PDNSGGHENCGHFLLSGKLARRWNDISCNNSY 120


>SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23)
          Length = 1250

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +2

Query: 221 TDPGPKNPHNCDVKGDLQLNGPGSKTAELGVVPSVK 328
           TDP     HNC +    Q  G    T E G V  VK
Sbjct: 546 TDPDKTQTHNCSLVNSAQSTGSSYFTVENGTVLEVK 581


>SB_52873| Best HMM Match : Oleosin (HMM E-Value=3)
          Length = 152

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/47 (19%), Positives = 26/47 (55%)
 Frame = +2

Query: 446 VSTSEEMDVISMSFILPSAQCDLDLTTQTKGWLNSIIFIGMMVGAYA 586
           +  ++ M++  +S ++P  +C+ DL+      + +++ +  +  AYA
Sbjct: 21  MQVADAMEITMLSILVPYVKCEWDLSIVQVAMITTMLIVSSVAVAYA 67


>SB_32414| Best HMM Match : Osteopontin (HMM E-Value=2.4)
          Length = 777

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 29  FTSPHPHRS*PPEVAERSQTTRKKHIGSS 115
           +T P P    PP V  RSQ  R K + S+
Sbjct: 408 YTKPEPKGRRPPRVGRRSQRHRSKSLNST 436


>SB_15303| Best HMM Match : Orexin_rec2 (HMM E-Value=6)
          Length = 421

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 406 WPLPLHAVGSMRSRQHFRGDGRHLDV 483
           W L +  +   + R HF G G H+DV
Sbjct: 185 WNLSIEKLRDFKKRAHFLGRGNHVDV 210


>SB_12953| Best HMM Match : Defensin_2 (HMM E-Value=3.6)
          Length = 433

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +2

Query: 188 YKAARPHRMVETDPGPKNPHNCDVKGDLQLNGPGSKTAELGVVPSVKKSKSDPE 349
           +K    ++  + +  P +P   D K  L L   GS +  LGVVP V   +  PE
Sbjct: 335 FKRGTSYQKTKKENQP-SPMTRDFKEHLTLTNTGSGSISLGVVPEVLIPEVSPE 387


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,703,864
Number of Sequences: 59808
Number of extensions: 509247
Number of successful extensions: 1440
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1435
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)