Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30807
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13050.1 68416.m01626 transporter-related low similarity to a...    59   2e-09
At3g17900.1 68416.m02280 expressed protein                             31   0.92 
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein...    29   2.1  
At5g41310.1 68418.m05020 kinesin motor protein-related                 28   4.9  
At4g09670.1 68417.m01588 oxidoreductase family protein similar t...    28   4.9  
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila...    28   4.9  
At1g69690.1 68414.m08020 TCP family transcription factor, putati...    28   4.9  
At2g40730.1 68415.m05024 HEAT repeat-containing protein contains...    28   6.5  
At5g42390.1 68418.m05161 metalloendopeptidase identical to chlor...    27   8.5  
At5g25000.1 68418.m02963 hypothetical protein                          27   8.5  
At1g04300.1 68414.m00421 meprin and TRAF homology domain-contain...    27   8.5  

>At3g13050.1 68416.m01626 transporter-related low similarity to
           apical organic cation transporter [Sus scrofa]
           GI:2062135, SP|Q02563 Synaptic vesicle protein 2 (SV2)
           {Rattus norvegicus}; contains Pfam profile PF00083:
           major facilitator superfamily protein
          Length = 500

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 23/71 (32%), Positives = 46/71 (64%)
 Frame = +2

Query: 380 ERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLTTQTKGWLNSIIF 559
           + A+   G+G+F   +LA  G+   +E M+++ +SF+ P+ Q   +L+ + +  + S++F
Sbjct: 11  DEALVAMGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSARQESLITSVVF 70

Query: 560 IGMMVGAYAWG 592
            GM++GAY+WG
Sbjct: 71  AGMLIGAYSWG 81


>At3g17900.1 68416.m02280 expressed protein
          Length = 838

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
 Frame = +1

Query: 79  LTNNKEEAHRIVTGKLYAVGSATPPSERRLSVPATTIQSRPPA---*DGRN*PGAQESSQ 249
           LT  K E H  +    ++VGS   PS  R  + ++++ S P       G    G Q +  
Sbjct: 558 LTLRKGEEHSFIVKPAFSVGSNLKPSAARNKLKSSSL-SLPTVNFERKGSGLSGDQYAVM 616

Query: 250 L*CKRGSTTKRPRFQNRRAWRRTFS*EIEI 339
           + C+   T  R  F+ R  WR   S ++ I
Sbjct: 617 VSCRCNYTESRLFFKQRTKWRPRVSRDLMI 646


>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 551

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +3

Query: 27  SSPHLTRTVHSHLKWRNAHKQQGRSTSDRHRQAIRCW*RHSPQ*ETFECPRDHHTKPP 200
           S+PH +       K +  HK++   TS R R+    W    P+ E+F+  +    K P
Sbjct: 403 STPHESNGKTKKKKKKKTHKEEQPQTSPRKRKHRGGWITEEPEEESFQRGKMRRPKSP 460


>At5g41310.1 68418.m05020 kinesin motor protein-related 
          Length = 961

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 44  PHRS*PPEVAERSQTTRKKHIGSSPA 121
           P  S PPE+ E+S+   K H+G  P+
Sbjct: 888 PETSNPPEMFEQSEQNDKAHVGVGPS 913


>At4g09670.1 68417.m01588 oxidoreductase family protein similar to
           AX110P [Daucus carota] GI:285739; contains Pfam profiles
           PF01408: Oxidoreductase family NAD-binding Rossmann
           fold, PF02894: Oxidoreductase family C-terminal
           alpha/beta domain
          Length = 362

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 485 FILPSAQCDLDLTTQTKGWLNSII 556
           FI+P  + +   TT TK W N ++
Sbjct: 265 FIIPYKETEASFTTSTKAWFNDLV 288


>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
           to C-terminal half of transcription-repair coupling
           factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
           contains Pfam profile: helicases conserved C-terminal
           domain
          Length = 823

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
 Frame = +2

Query: 227 PGPKNPHNCDVKGDLQLNGPGSKTAELGVVPSVKKSKSDPEKGSNSEKADFERAI-ELTG 403
           P PKNP   D       N            P  K++  D EK     +   +R I    G
Sbjct: 252 PYPKNPIMADFAAQFPYNA----------TPDQKQAFLDVEKDLTERETPMDRLICGDVG 301

Query: 404 YGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDL 514
           +G+    L A+  +VST ++  V++ + +L     D+
Sbjct: 302 FGKTEVALRAIFCVVSTGKQAMVLAPTIVLAKQHYDV 338


>At1g69690.1 68414.m08020 TCP family transcription factor, putative
           similar to PCF1 (GI:2580438) and PCF2 [(GI:2580440)
           Oryza sativa]
          Length = 325

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = +2

Query: 224 DPGPKNPHNCDVKGDLQLNGPGSKTAELGVVPSVKKSKSDPEKGSNSEKADFERAIELTG 403
           DP P + H  +    L  +   S +  L ++ +  +  S+P+K      +  +R  ++ G
Sbjct: 2   DPDPDHNHRPNFPLQLLDSSTSSSSTSLAIISTTSEPNSEPKKPPPKRTSTKDRHTKVEG 61

Query: 404 YGR 412
            GR
Sbjct: 62  RGR 64


>At2g40730.1 68415.m05024 HEAT repeat-containing protein contains
           INTERPRO:IPR000357 HEAT repeat
          Length = 798

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = -3

Query: 610 SESATEPPSVRAHHHT--DEDYTV*PS 536
           + +ATE PSV+A HHT  + D+T  P+
Sbjct: 617 TSTATEAPSVKASHHTRSNSDFTDQPA 643


>At5g42390.1 68418.m05161 metalloendopeptidase identical to
           chloroplast processing enzyme metalloendopeptidase
           [Arabidopsis thaliana] gi|2827039|gb|AAC39482
          Length = 1265

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +1

Query: 70  GGTLTNNKE---EAHRIVTGKLYAVGSATPPSERRLSVPATTIQSRPP 204
           GGT +N K    +  +++  + +A+    PP E   S+P T++  +PP
Sbjct: 436 GGTFSNEKTNTADQSKMIKRERHAI---RPPVEHNWSLPGTSVDLKPP 480


>At5g25000.1 68418.m02963 hypothetical protein 
          Length = 121

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -1

Query: 495 GRMNDIEMTSISSEVLTRPHTANSM*WKRPYPVSSIARSKSAFSELEPFSGSDFD 331
           G +N+ E  ++   +L   +  + + WKR YP+  +   K    E+E  S +D D
Sbjct: 59  GDLNEEEDDNVLMHLLKNNYVFSELDWKRGYPL--LQHQKDEEIEIEDKSNADAD 111


>At1g04300.1 68414.m00421 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471;contains Pfam PF00917: Meprin And
           TRAF-Homology (MATH) domain
          Length = 1052

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = -2

Query: 386 PVRSRLFPNWSPSPDRISIS*LKVRRQARRFWNLGRLVVDPLLHHNCEDSWAPGQFLPSY 207
           P  + + P   PSP  +S S        R   + GRL  DP LH+  + ++ P  +  + 
Sbjct: 764 PSSAPIIPAMRPSPITVSSSVQTTTSLPRSVSSAGRLGPDPSLHN--QQTYTPQSYKNAI 821

Query: 206 AGGRL 192
            G  L
Sbjct: 822 VGNSL 826


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,762,972
Number of Sequences: 28952
Number of extensions: 359271
Number of successful extensions: 1000
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)