Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30806
(718 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 192 3e-49
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 7e-13
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10) 28 8.7
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 192 bits (467), Expect = 3e-49
Identities = 105/217 (48%), Positives = 130/217 (59%), Gaps = 4/217 (1%)
Frame = -1
Query: 643 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGV 464
+++DTRAYFT+AT+IIAVPTGIK+F LAT++G I + +L +GFVFLFT+GGLTGV
Sbjct: 1 MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60
Query: 463 ILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFTGLSLNSYILKIQFFT 284
ILANSS+D+ +HDTYYVVAHFHYVLS + TG N KI F+
Sbjct: 61 ILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWI 120
Query: 283 IFIGVNITFFPQHFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 104
+FIGVNITFFPQHFLGLAG PRRYSD+ D
Sbjct: 121 MFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAY 180
Query: 103 INQ-RINLFSLNLPS---SIE*YQNLPPAEHSYNELP 5
+ + + + N S S+E Q PPA H+YNELP
Sbjct: 181 VREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELP 217
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 71.3 bits (167), Expect = 7e-13
Identities = 45/113 (39%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = -1
Query: 331 TGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXX 152
TG N KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D
Sbjct: 19 TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTI 78
Query: 151 XXXXXXXXXXXXXXXXINQ-RINLFSLNLPS---SIE*YQNLPPAEHSYNELP 5
+ + + + N S S+E Q PPA H+YNELP
Sbjct: 79 SVVGVVWFIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELP 131
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 37.9 bits (84), Expect = 0.008
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Frame = -1
Query: 247 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 71
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 70 LPS---SIE*YQNLPPAEHSYNELP 5
S S+E Q PPA H+YNELP
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELP 85
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 37.9 bits (84), Expect = 0.008
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Frame = -1
Query: 247 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 71
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 70 LPS---SIE*YQNLPPAEHSYNELP 5
S S+E Q PPA H+YNELP
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELP 85
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 37.9 bits (84), Expect = 0.008
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Frame = -1
Query: 247 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 71
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 70 LPS---SIE*YQNLPPAEHSYNELP 5
S S+E Q PPA H+YNELP
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELP 85
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 37.9 bits (84), Expect = 0.008
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Frame = -1
Query: 247 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 71
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 70 LPS---SIE*YQNLPPAEHSYNELP 5
S S+E Q PPA H+YNELP
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELP 85
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 37.9 bits (84), Expect = 0.008
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Frame = -1
Query: 247 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 71
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 70 LPS---SIE*YQNLPPAEHSYNELP 5
S S+E Q PPA H+YNELP
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELP 85
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 36.3 bits (80), Expect = 0.025
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -1
Query: 247 HFLGLAGIPRRYSDYPD 197
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -1
Query: 664 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL 515
HH+ T+ I + T+I PT I + + +H T IN +P ++
Sbjct: 14 HHLHTIIIHLHPTVIHLHPTVIFLHPTVIHLHPTVLNLHPTIINLHPTVI 63
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -3
Query: 344 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNT 222
+ FIY + FL +KN F+ YW+ YN F W T
Sbjct: 14 VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRT 56
>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
Length = 319
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 72 ISHHQLNDIKIYHQQNIHIMNYQF 1
I+HHQ + I I H Q+ I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,053,504
Number of Sequences: 59808
Number of extensions: 207435
Number of successful extensions: 351
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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