Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30799
         (654 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    24   1.3  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   2.2  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   5.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   6.7  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.9  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   8.9  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 547 VLGTE-AAPLQASVVLPAALCSTSSSAPN 630
           VL T+ A+PL   V +P    ST+SSA N
Sbjct: 187 VLPTQGASPLPLLVPIPQRTASTASSASN 215


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = -2

Query: 536 LICFLTACATLKRPSG----ENITPPLCFTMSFATLGLANVTNP*HLE 405
           ++C+    +T +  +G    E+I P LC  + ++ +GL + +   HLE
Sbjct: 22  VVCYHGIWSTYRLNNGKFTVEDIDPTLCTHLIYSFVGLGDDSRIKHLE 69


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +3

Query: 378 EGHL-RSGRRFQVLRVRDIRQSKSCEAHRKAEWRSNV 485
           E H+   G R  +   +D   S   E HR A WR ++
Sbjct: 165 EAHIVPEGSRTPIEIPQDFTASDLDEEHRVAYWREDI 201


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 146 IWSRKAPPATERAPTPMKS 202
           I+    PPA + A TP+ S
Sbjct: 6   IYEESPPPAPQSAATPISS 24


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 601 EQLVAQRKLVVGQLQFPGLGVDLS 530
           +QL+ +R+L VG  Q     +DLS
Sbjct: 381 QQLIRERQLAVGGSQEESRVLDLS 404


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 583 VVLPAALCSTSSSAP 627
           ++LP   CS +SS+P
Sbjct: 189 ILLPTPTCSEASSSP 203


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,592
Number of Sequences: 336
Number of extensions: 3005
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)