Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30799
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 48 2e-06
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 46 5e-06
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 42 1e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 41 1e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 41 2e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 38 0.001
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 36 0.005
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 36 0.005
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 34 0.016
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 33 0.036
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 33 0.048
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 33 0.048
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 33 0.048
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 31 0.11
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 31 0.19
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 1.0
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 28 1.0
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 26 4.1
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 25 7.2
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 25 9.5
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 9.5
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRVAKLIVKQS 471
+FVG S D+ L + F + T+ ARVI D ++G SK YG+V F +P AK V +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 472 G 474
G
Sbjct: 325 G 325
Score = 35.9 bits (79), Expect = 0.005
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRVAKLIVKQS 471
+FVG S T++DL F + + R+ D ++G K +G+VTF+ AK V+ +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 472 G 474
G
Sbjct: 428 G 428
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 46.0 bits (104), Expect = 5e-06
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQSG 474
+F+ DE L FS F T+T+A+++ D G SK +GFV + +P A V +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425
Query: 475 GVMFSPLGR-LRVAQAVRKQI 534
M + G+ L VA A RK++
Sbjct: 426 QRMLA--GKPLYVALAQRKEV 444
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRVAKLIVKQ 468
++F+GG + TTD+ L +F F V V+ D G S+ +GF+TF +P+ ++ +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Score = 35.5 bits (78), Expect = 0.007
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVKQ 468
++FVGG T+E+ FF+ F V A ++ D+ G + +GFVT+ + + + Q
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 41.1 bits (92), Expect = 1e-04
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFF-STFATVTAARVIYDR-AGVSKCYGFVTFASPR 444
IFVG TT D DL+ F S + + T+A++I D G+S+ YGFV F+S +
Sbjct: 184 IFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEK 235
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/67 (20%), Positives = 31/67 (46%)
Frame = +1
Query: 283 IHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIV 462
++ +FVGG + +++DL F F + ++ + + C GFV ++ A+ +
Sbjct: 295 LNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKG----C-GFVQYSEKSAAEKAI 349
Query: 463 KQSGGVM 483
G +
Sbjct: 350 NTMQGAL 356
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 40.7 bits (91), Expect = 2e-04
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQSG 474
I+VG T+D +L F+ +V AR+ Y+ G SK +G V F + A +++
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 475 GVMFSPLGR-LRVAQAVRKQISQLPVLGTEAAPLQASVVLPAALCSTSSSAP 627
G + GR L+++ A + LP + T + L + P + ++++P
Sbjct: 342 GYRYG--GRPLQLSYA--HYATPLPAVPTVLSGLPSVAYTPPVMHIPTTNSP 389
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 37.9 bits (84), Expect = 0.001
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Frame = +1
Query: 268 KFGTVIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRV 447
+F ++ +FVGG S ++E+L F F ++Y + K GFV F + +
Sbjct: 296 QFADTANSTVFVGGLSKFVSEEELKYLFQNF-----GEIVYVKIPPGKGCGFVQFVNRQS 350
Query: 448 AKLIVKQSGGVMFSPLG--RLRVAQAVRKQISQLPVLGTEAAPLQASVVLPAALCSTSSS 621
A++ + Q G PLG R+R++ + P L ++ Q ++ PA + S
Sbjct: 351 AEIAINQLQGY---PLGNSRIRLSWGRNQNPIAAPALNYQSQVSQTTI--PATSLFPAMS 405
Query: 622 AP 627
P
Sbjct: 406 LP 407
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 35.9 bits (79), Expect = 0.005
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 286 HNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFASPRVAKLIV 462
+ +F+ S T + D+ + F+ + + RV+ ++ G S Y FV F R K+
Sbjct: 99 YKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAY 158
Query: 463 KQSGGVMFS 489
K S G+M +
Sbjct: 159 KASAGLMLN 167
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 35.9 bits (79), Expect = 0.005
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVK 465
N +FV G + +++L + FS F TVT R++ + S+ +GF++F++ A +
Sbjct: 101 NDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAID 160
Query: 466 QSGGVMFSPLGRLRVAQAVRKQISQLPVLG 555
F GR+ Q ++ P G
Sbjct: 161 NLNSQEF--YGRVLNVQKAKRSRPHSPTPG 188
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 34.3 bits (75), Expect = 0.016
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 286 HNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRVAKLIV 462
++ +FV + T +DL FFS + A V+ + G ++ YGFVTF+ A+
Sbjct: 4 NSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAA 63
Query: 463 KQ 468
K+
Sbjct: 64 KE 65
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 33.1 bits (72), Expect = 0.036
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTF 432
N +FV + T DEDL FS F + + +VI D+ G S Y F+ F
Sbjct: 244 NVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEF 292
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 32.7 bits (71), Expect = 0.048
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVI-YDRAGVSKCYGFVTF 432
+FVG TTD DL + F + R++ ++ G K +GFV F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 32.7 bits (71), Expect = 0.048
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTF 432
+FVG + +E LW++F ++ R++ D + + K + ++ F
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQF 318
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 32.7 bits (71), Expect = 0.048
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 331 EDLWKFFSTFATVTAARVI-YDRAGVSKCYGFVTFASPRVAKLIVKQSGGVMFSPLGRLR 507
+ L + FS F + + + Y +SK YGFV+F+ P A + GV+F RL
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGK-KRLF 493
Query: 508 VAQAVRKQ 531
V A +++
Sbjct: 494 VNYAEKRE 501
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQ 468
+R+ V TDED+ F F + + D SK +G++ + +P A+ +++
Sbjct: 340 HRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEK 399
Query: 469 SGG 477
G
Sbjct: 400 MNG 402
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVKQS 471
+FV + T +L+ FF V A+++ D+ +G SK +V F + + S
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301
Query: 472 G 474
G
Sbjct: 302 G 302
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 30.7 bits (66), Expect = 0.19
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +1
Query: 313 SLTTTDEDLWKFFSTFATVTAARVI-YDRAGVSKCYGFVTFASPRVAKLIVKQSGGVMFS 489
++ T L FS F ++ ++ + Y +G+SK YGFV F A G+M
Sbjct: 392 TVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVG 451
Query: 490 PLGRLRVAQAVRK 528
R+ V A RK
Sbjct: 452 K-KRIFVCFAERK 463
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 118 YNVLRSPFYNQTSACSLVY*TII*RLLSGVGPDVP 14
YN SP+YNQ S+ Y +I + + P+VP
Sbjct: 423 YNATASPYYNQNINSSIDYSSIYSNDVPAIPPNVP 457
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 283 IHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVI 387
+ RI+VGG S + DL FS F +V+ +I
Sbjct: 3 LEKRIYVGGLSSSIESSDLESRFSRFGSVSNLEII 37
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGF 423
N ++VG S TT+E ++ FS + + DR + C GF
Sbjct: 32 NCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPC-GF 75
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 456 HRKAEWRSNVFSAWAF 503
HR+ WRSN F WAF
Sbjct: 135 HREG-WRSNAFVLWAF 149
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 160 GSASNRKSADPHEKLKALLNS 222
GSA N+KS D EK K L S
Sbjct: 394 GSAQNKKSGDNSEKTKNSLKS 414
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 556 TEAAPLQASVVLPAALCSTSSSAPNVWSMRT 648
T A+P+ +SV+ P+ TSS N S+++
Sbjct: 362 TSASPISSSVISPSVSSPTSSILTNSGSIKS 392
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,970
Number of Sequences: 5004
Number of extensions: 51113
Number of successful extensions: 179
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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