Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30799
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 59 4e-09
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 46 2e-05
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 46 4e-05
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 44 8e-05
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 44 1e-04
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 41 8e-04
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 41 0.001
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 40 0.002
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 40 0.002
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 38 0.009
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 38 0.009
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 37 0.012
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.038
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 35 0.050
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 34 0.088
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 33 0.27
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 32 0.47
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_56231| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_14070| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) 30 1.4
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_17141| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 29 4.4
SB_58| Best HMM Match : Prenyltrans (HMM E-Value=1.4e-16) 29 4.4
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 28 5.8
SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 5.8
SB_44509| Best HMM Match : EMI (HMM E-Value=4.2) 28 7.6
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 28 7.6
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_37791| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_6351| Best HMM Match : IncA (HMM E-Value=0.13) 28 7.6
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 58.8 bits (136), Expect = 4e-09
Identities = 33/86 (38%), Positives = 51/86 (59%)
Frame = +1
Query: 283 IHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIV 462
I RIFV GF+ TT+ +L FF + V ++++ D+ GVSK Y F+TF S VA +
Sbjct: 6 ISKRIFVKGFNRETTESELRAFFEEYGVVKESKIVRDKHGVSKGYAFITFESQEVADGL- 64
Query: 463 KQSGGVMFSPLGRLRVAQAVRKQISQ 540
+ + G+ F L + QAVR++ S+
Sbjct: 65 RDNKGLDFKD-KVLSIGQAVRRKSSR 89
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = +1
Query: 328 DEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVA-KLIVKQSGGVMFSPLGRL 504
DE L + FS + T+++A+V+ D G SK +GFV F+SP A K + + +G ++ S +
Sbjct: 225 DERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNGRILISKPLYV 284
Query: 505 RVAQAVRKQISQL 543
+AQ ++ +QL
Sbjct: 285 ALAQRREERKAQL 297
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVK 465
++FVGG + D+ L KFF+ F + A VI DR SK YGFVT A+ A+L K
Sbjct: 11 KLFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELACK 69
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 44.4 bits (100), Expect = 8e-05
Identities = 23/64 (35%), Positives = 37/64 (57%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQS 471
+IF+GG + TT+E L +FS + T+ VI R G S+ +GFVT+ S ++K+
Sbjct: 51 KIFIGGLNWNTTEEGLKDYFSQWGTIVDC-VIMKRDGRSRGFGFVTYESSDSVNEVLKKK 109
Query: 472 GGVM 483
V+
Sbjct: 110 DHVL 113
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFST 357
+IFVGG + TT +ED+ ++F++
Sbjct: 140 KIFVGGLASTTVEEDIKEYFNS 161
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFASPRVAKLIVK 465
++FVGG + TT+E L ++F + +T VI D A S+ +G+VTFA +V + ++K
Sbjct: 15 KLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYKVTRNVLK 73
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQS 471
+FVGG + T +E L +F F V + R++ G S+ YGFV F +K ++K+S
Sbjct: 82 VFVGGLASGTDEEGLKDYFEQFGEVESVRIMRTFLGYSRNYGFVLFKDDGPSKEVLKKS 140
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 41.1 bits (92), Expect = 8e-04
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRVAKLIVKQ 468
R++VG T+ + F F TV + ++IYD SK YGFV F AK ++Q
Sbjct: 243 RLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQ 302
Query: 469 SGG 477
G
Sbjct: 303 MNG 305
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVK 465
+ +F+ TD DL + F F TV +A+V D+ +SKC+GFV++ + A+ ++
Sbjct: 277 SNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQ 336
Query: 466 QSGG 477
G
Sbjct: 337 HMNG 340
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASP 441
RIF G TDE L + F+ + + A+++ D ++ SK YGFV+F P
Sbjct: 218 RIFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDP 268
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIV 462
+++ G TTD+DL + + T+ + + I D+ + K YGFV F SP A+ V
Sbjct: 102 LYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAV 158
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 274 GTVIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAG 402
G+ ++F+GG + TT+EDL ++FST+ V + Y G
Sbjct: 197 GSANDGKVFIGGLAFGTTEEDLKEYFSTYGMVEVKKAEYRERG 239
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 37.5 bits (83), Expect = 0.009
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTF 432
N +FV + TTDEDL FS F T+ + VI D + G S Y F+ F
Sbjct: 120 NVLFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEF 168
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 37.5 bits (83), Expect = 0.009
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLI-VKQS 471
+++GG S T+ L + F+ F V ++ D +G S+ GFV F S VA+ V +
Sbjct: 526 VWIGGLSEDVTENVLLELFNKFGPVKDVVILRDESGKSRQSGFVHFWSSDVAEAANVGMN 585
Query: 472 GGVMFSPLGRLRVAQAVRKQISQLPVLGTEAA 567
G + + + A+ V S++ V+ A+
Sbjct: 586 GCDILGKIVETKYAKEVTTNYSKVHVVKVNAS 617
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 325 TDEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFASPRVAKLIVKQSGG 477
+ ED+ K F T VT+ ++I DRA G S Y FV + +P A V++ G
Sbjct: 39 SQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNG 90
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 286 HNR-IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLI 459
H R +F+G +E L + F+T V + R+I DR G+ K +G+V F S
Sbjct: 54 HQRSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFA 113
Query: 460 VKQS 471
+K +
Sbjct: 114 LKMN 117
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 35.5 bits (78), Expect = 0.038
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Frame = +1
Query: 271 FGTVIHNRIFVGG-FSLTTTDED---LWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFA 435
FGTVI ++F+ +++ + L + F F TV +A+V D+ +SKC+GFV++
Sbjct: 252 FGTVISAKVFIDKQTNMSKCFGECCRLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYD 311
Query: 436 SPRVAKLIVKQSGG 477
+ A+ ++ G
Sbjct: 312 NVMSAQNAIQHMNG 325
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 35.1 bits (77), Expect = 0.050
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVKQS 471
+FVG ++E L + FS V + R+++DR G K YGF + A ++
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNL 86
Query: 472 GGVMFSPLGR-LRVAQAVRKQ 531
G + GR LRV A ++
Sbjct: 87 NGYELN--GRALRVDSAASEK 105
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 34.3 bits (75), Expect = 0.088
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVT 372
+IF+GG S T++ED+ K+FS F V+
Sbjct: 184 KIFIGGLSTNTSEEDMKKYFSQFGKVS 210
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 32.7 bits (71), Expect = 0.27
Identities = 25/100 (25%), Positives = 39/100 (39%)
Frame = -2
Query: 596 AGSTTEACSGAASVPRTGS*LICFLTACATLKRPSGENITPPLCFTMSFATLGLANVTNP 417
AGSTT + + S PRTGS + +T + S + P T S +T + + P
Sbjct: 73 AGSTTTTSAPSTSTPRTGSTTTTSAPSTSTPRTGSTTTTSAPSTSTTSNSTTRAPSTSTP 132
Query: 416 *HLETPARS*MTLAAVTVAKVEKNFHRSSSVVVREKPPTN 297
T T + +T + R+ S P T+
Sbjct: 133 RTGSTITLRTSTTSVMTTTPSTTSISRAGSTTTTSDPSTS 172
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 32.7 bits (71), Expect = 0.27
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGV-SKCYGFVTFASPRVAKL 456
I++G + ++ KFF F TV R+ + SK Y FV FA VAK+
Sbjct: 100 IYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVAKI 154
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +1
Query: 268 KFGTVIHNR-IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPR 444
KF T + +FV + ++ + FS V R++ +RAG K YG+V +
Sbjct: 163 KFPTSLDKHTLFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQES 222
Query: 445 VAKLIV 462
A V
Sbjct: 223 SASTAV 228
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTF 432
++FVGG S TT E L ++FS + + + D G + + FV F
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQF 77
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 31.9 bits (69), Expect = 0.47
Identities = 23/116 (19%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFASPRVAKLIVK 465
++IF+GG ++ + + S+F + A ++ D A G+SK Y F + + + ++
Sbjct: 673 HKIFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQ 732
Query: 466 QSGGVMFSPLGRL--RVAQAVRKQISQLPVLGTEAAPLQ-----ASVVLPAALCST 612
G+ + R + ++ ++ + A LQ S+ +P A+ +T
Sbjct: 733 GLNGMQLGDKKLIVQRASVGAKQNLNNPQAMNMVPAQLQIPGLDISMAVPGAVAAT 788
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +1
Query: 283 IHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFAS 438
+ ++FVG +TT++ L ++F+ F VT + + +GFVTFAS
Sbjct: 197 VPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYI----PKPFRHFGFVTFAS 244
>SB_56231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 432 RQSKSCEAHRKAEWRSNVFSAWAFESRAGCQETDKSTPSPG 554
RQ + + RK EW +N S A +++ G ++ K+ SPG
Sbjct: 186 RQGQVVRSRRKGEWYANQMSRLANQNQTGPKDLIKNRESPG 226
>SB_14070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 31.1 bits (67), Expect = 0.82
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 94 KMENVKRYIRSESA-SCAHMVEEGSASNRKSADPHEKL 204
KM +++R +R S SCA + ++ S R A+ HEKL
Sbjct: 72 KMIDIRRVLRQRSMRSCAKLTKDDRYSTRTPAEEHEKL 109
>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
Length = 694
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 301 VGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYG 420
V G SL TT+ DL F + V A +++YD + G
Sbjct: 185 VFGLSLYTTERDLRPVFEKYGPVEAIQIVYDHQAKERTTG 224
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFA-TVTAARVIYDRAGV--------SKCYGFVTFASP 441
N+++ G T ++L F + TVT ++ + S+ +GFVTFA+P
Sbjct: 50 NKVYAGNLPFKLTQDELKAVFEAESLTVTDVLIVKEPRNEFYQQQEPRSRGFGFVTFANP 109
Query: 442 RVAKLIVKQSGG 477
A+ VK G
Sbjct: 110 EDAQTAVKSLNG 121
>SB_17141| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 28.7 bits (61), Expect = 4.4
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = -1
Query: 495 KRRKHYSATLLYDELRNSWTGECHEPVTLGN--ACPIVDDPRGRHCRESRE-ELPQVFIS 325
K+RK S Y ++ TG +P T +CP + R H R+ +P ++
Sbjct: 455 KKRKSTSGAA-YIKILGQATGPPSKPKTATEKKSCPSIS--RSNHDASPRDYRMPTHYMR 511
Query: 324 GRQGEAPHKYPIVDYRPEFRGIG 256
G+ H Y+PE RG+G
Sbjct: 512 RFGGQFHHVLEARSYKPEHRGMG 534
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTF 432
NR+++G T ++D+ KFF T+ +I + YGFV F
Sbjct: 3 NRVYLGRLPYGTREDDVKKFFYTYGRFKIREII-----LKDGYGFVEF 45
>SB_58| Best HMM Match : Prenyltrans (HMM E-Value=1.4e-16)
Length = 713
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = -1
Query: 522 DSLRDSQTPKRRKHYSATLLYDELRNSWTGECHEPVTLGNACPIVDDPRGRHCRESREEL 343
++LR+S R+ S L DELR LGN+ PR CRES+++L
Sbjct: 428 EALRESDERHIRELTSKDQLIDELRKRLENASQASPVLGNSHRTEACPR---CRESKDKL 484
Query: 342 PQV 334
V
Sbjct: 485 EDV 487
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 28.3 bits (60), Expect = 5.8
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVKQ 468
R ++G S + ++ L + F V +VI DR G + +GFVTF S + + +
Sbjct: 6 RCYIGNLSYSVDEQALEEKFHG-CDVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAIDE 64
Query: 469 SGGVMFSPLGR-LRVAQA 519
G F GR ++V QA
Sbjct: 65 FDGQDFD--GRPMKVNQA 80
>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1080
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 523 RKQISQLPVLGTEAAPLQASVVLPAALCSTSSSAPNVWSMRTAT 654
++Q SQ+ G+E P+ ++ LP+ + SS AP + S T T
Sbjct: 337 QQQASQMQQSGSEGTPINLNIDLPSII---SSDAPTMASSTTTT 377
>SB_44509| Best HMM Match : EMI (HMM E-Value=4.2)
Length = 782
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 94 KMENVKRY-IRSESASCAHMVEEGSASNRKSADPHEKLK 207
KM +++R ++ SCA + ++ S R A+ HEKL+
Sbjct: 255 KMIDIRRVRLQRSMRSCAKLTKDDRYSTRTPAEEHEKLR 293
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 94 KMENVKRYIRSESA-SCAHMVEEGSASNRKSADPHEKLKA 210
K +++R R +S SCA + ++ S R A+ HEKL A
Sbjct: 522 KTIDIRRVRRQKSMRSCAKLTKDDRYSTRTPAEEHEKLGA 561
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFA-TVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQS 471
IFVG +T + ++++FST V + I +G SK + FV + ++ +
Sbjct: 44 IFVGSLHPSTVESTIFEYFSTLGEQVEHVKCIRTLSGKSKGFAFVRLRKKEAVESVLGRD 103
Query: 472 GGVM 483
V+
Sbjct: 104 DHVI 107
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +1
Query: 277 TVIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIY---DRAGVSKCYGFVTFASPRV 447
+V ++R+FVG T + +++ + FS ++Y D+ G ++ + F+ + S +
Sbjct: 229 SVANSRLFVGSIPKTKSKQEILEEFSKVTNGLDDVIVYLSADQKGKNRGFAFLEYESHQA 288
Query: 448 AKL 456
A L
Sbjct: 289 ASL 291
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTF-----ATVTAARVIYDRAGVSKCYGFVTFAS 438
++FVGG + TT+E + +F +F A V++ + G S+ + FV F++
Sbjct: 9 KLFVGGLNEDTTEETVRAYFKSFCEGSEADVSSVSLAKTPEGKSRKFCFVEFSN 62
>SB_37791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 264
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = +1
Query: 463 KQSGGVMFSPLGRLRVAQAVRKQISQLPVLGTEAAPLQASVVLPAALCSTSS 618
+++GG F+P R R++ + + + L + PL+A ++L S+S+
Sbjct: 147 QRAGGQRFTPERRARISSGLMSPVRRSQRLAAQRMPLKAGNTSTSSLISSSA 198
>SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)
Length = 417
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -1
Query: 504 QTPKRRKHYSATLLYDELRNSWTG--ECHEPVTLGNACPIVDDPRGRHCRESREE 346
+ P RR + A L L NSW H+ T+ + PIV P G H ES E
Sbjct: 18 EQPIRRPRFVA-LRQCSLFNSWYNLEREHQITTIASLPPIVTLPAGHHTAESTVE 71
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,539,206
Number of Sequences: 59808
Number of extensions: 428648
Number of successful extensions: 1042
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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