Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30799
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 485 FLRLGV*ESRRLSGNR*VNSQSWELKL 565
           FL L   E  RLSGNR V    W++ L
Sbjct: 886 FLPLRSLEILRLSGNRLVTFPVWQVTL 912


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 568 GQLQFPGLGVDLSVS*QPARLSNAQAEKTLLRH 470
           GQ+   G G+  +V   P  L NAQ +   +R+
Sbjct: 684 GQISQVGGGIQQNVEVLPENLVNAQQQVQAVRN 716


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -1

Query: 285 DYRPEFRGIGGRQGVFCVVFGGIQ*SLQLFMGVGALSVAGGAFLDHMRA 139
           D  P     G R G  C++ G     L L      LSV+G A ++ +++
Sbjct: 418 DLSPSSLADGARFGGSCLIHGPPLPPLPLHTECEDLSVSGEAGIEEVKS 466


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -1

Query: 285 DYRPEFRGIGGRQGVFCVVFGGIQ*SLQLFMGVGALSVAGGAFLDHMRA 139
           D  P     G R G  C++ G     L L      LSV+G A ++ +++
Sbjct: 418 DLSPSSLADGARFGGSCLIHGPPLPPLPLHTECEDLSVSGEAGIEEVKS 466


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 544 PVLGTEAAPLQASVVLPAALCSTSSSAP 627
           PV+ T ++P     +  A   STSSS P
Sbjct: 503 PVVETNSSPSPNPRIASAPSSSTSSSPP 530


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,457
Number of Sequences: 438
Number of extensions: 3487
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)