Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30799
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 53 2e-07
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 53 2e-07
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 52 4e-07
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 51 6e-07
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 51 6e-07
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 51 6e-07
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 51 6e-07
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 51 6e-07
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 51 8e-07
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 50 1e-06
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 49 2e-06
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 49 3e-06
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 49 3e-06
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 49 3e-06
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 48 4e-06
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 48 4e-06
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 48 4e-06
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 48 4e-06
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 48 4e-06
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 48 5e-06
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 48 5e-06
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 48 7e-06
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 48 7e-06
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 48 7e-06
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 47 1e-05
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 47 1e-05
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 47 1e-05
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 47 1e-05
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 47 1e-05
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 46 2e-05
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 46 2e-05
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 46 2e-05
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 46 3e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 45 5e-05
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 45 5e-05
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 45 5e-05
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 45 5e-05
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 44 7e-05
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 44 9e-05
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 44 1e-04
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 43 2e-04
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 43 2e-04
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 43 2e-04
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 43 2e-04
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 42 3e-04
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 42 3e-04
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 42 3e-04
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 42 3e-04
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 42 3e-04
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 42 3e-04
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 42 4e-04
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 42 4e-04
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 42 4e-04
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 42 5e-04
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 42 5e-04
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 42 5e-04
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 42 5e-04
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 42 5e-04
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 42 5e-04
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 42 5e-04
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 41 6e-04
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 41 8e-04
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 41 8e-04
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 41 8e-04
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 41 8e-04
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 41 8e-04
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 40 0.001
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 40 0.001
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 40 0.001
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 40 0.001
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 40 0.001
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 40 0.002
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 40 0.002
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 40 0.002
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 40 0.002
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 39 0.003
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 39 0.003
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 39 0.003
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 39 0.003
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 39 0.003
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 38 0.004
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 38 0.004
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 38 0.004
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 38 0.004
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 38 0.008
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 38 0.008
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 37 0.013
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 37 0.013
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 37 0.013
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 36 0.018
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 36 0.018
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 36 0.024
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 36 0.024
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 36 0.031
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 36 0.031
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 35 0.041
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 35 0.041
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 35 0.054
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 35 0.054
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 34 0.072
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 34 0.072
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 34 0.072
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 34 0.072
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 34 0.095
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 34 0.095
At1g51520.2 68414.m05799 expressed protein contains a weak hit t... 34 0.095
At1g51520.1 68414.m05798 expressed protein contains a weak hit t... 34 0.095
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 31 0.51
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 31 0.51
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 31 0.51
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 31 0.51
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 31 0.67
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 31 0.67
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 30 1.2
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 30 1.2
At2g33440.1 68415.m04099 splicing factor family protein similar ... 30 1.2
At2g41780.1 68415.m05164 expressed protein 29 2.0
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 29 2.7
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 29 2.7
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 29 2.7
At3g47010.1 68416.m05105 glycosyl hydrolase family 3 protein bet... 29 2.7
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 29 2.7
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 29 2.7
At5g01210.1 68418.m00026 transferase family protein contains Pfa... 29 3.6
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 3.6
At1g61080.1 68414.m06877 proline-rich family protein 29 3.6
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 28 4.7
At1g30160.1 68414.m03687 expressed protein contains Pfam profile... 28 4.7
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 28 6.2
At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ... 28 6.2
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 27 8.2
At3g45660.1 68416.m04933 proton-dependent oligopeptide transport... 27 8.2
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 27 8.2
At1g26330.1 68414.m03211 hypothetical protein 27 8.2
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 27 8.2
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +1
Query: 286 HNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIV 462
+ ++F+GG S T +E L ++FS+F V A ++ DR G ++ +GFV FA P VA++++
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVI 64
Query: 463 KQSGGV 480
+ +
Sbjct: 65 TEKHNI 70
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRVAKLIVKQ 468
+IFVGG + T+ D +F F T T V+YD + +GF+T+ S + ++ +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 469 SGGVMFSPLGRLRVAQAVRKQISQLP 546
+ + + + V +AV K++S P
Sbjct: 169 TFHELNGKM--VEVKRAVPKELSPGP 192
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +1
Query: 286 HNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIV 462
+ ++F+GG S T +E L ++FS+F V A ++ DR G ++ +GFV FA P VA++++
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVI 64
Query: 463 KQSGGV 480
+ +
Sbjct: 65 TEKHNI 70
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRVAKLIVKQ 468
+IFVGG + T+ D +F F T T V+YD + +GF+T+ S + ++ +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 469 SGGVMFSPLGRLRVAQAVRKQISQLP 546
+ + + + V +AV K++S P
Sbjct: 169 TFHELNGKM--VEVKRAVPKELSPGP 192
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 51.6 bits (118), Expect = 4e-07
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Frame = +1
Query: 271 FGTVIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFASPRV 447
FG H ++FVGG + T +++ ++F F + A +I D+A G SK YGFVTF
Sbjct: 11 FGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDS 70
Query: 448 AKLIVKQSGGVMFSPLGRLRVAQAVRKQISQLPVLGTEAAPLQ 576
A V V+ +A R + S G +P Q
Sbjct: 71 ATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQ 113
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/63 (34%), Positives = 37/63 (58%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQ 468
N ++VGG T+E + + FS + +V +++ DR+ KCYGFVTF++ R A ++
Sbjct: 7 NSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIED 66
Query: 469 SGG 477
G
Sbjct: 67 MDG 69
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +1
Query: 283 IHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLI 459
+ R FVGG + T DEDL + FS F V +++I DR +G S+ +GFVTF + +
Sbjct: 4 VEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
Query: 460 VKQSGG 477
+++ G
Sbjct: 64 IEEMNG 69
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +1
Query: 283 IHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLI 459
+ R FVGG + T DEDL + FS F V +++I DR +G S+ +GFVTF + +
Sbjct: 4 VEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
Query: 460 VKQSGG 477
+++ G
Sbjct: 64 IEEMNG 69
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +1
Query: 283 IHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLI 459
+ R FVGG + T DEDL + FS F V +++I DR +G S+ +GFVTF + +
Sbjct: 4 VEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
Query: 460 VKQSGG 477
+++ G
Sbjct: 64 IEEMNG 69
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +1
Query: 283 IHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLI 459
+ R FVGG + T DEDL + FS F V +++I DR +G S+ +GFVTF + +
Sbjct: 4 VEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
Query: 460 VKQSGG 477
+++ G
Sbjct: 64 IEEMNG 69
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 50.8 bits (116), Expect = 8e-07
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQ 468
+ I+V ++ T+E+L K FS T+T+ +++ D G SK +GFV F++P A VK
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT 363
Query: 469 SGGVMF--SPLGRLRVAQAVRKQISQLPV 549
G MF PL + +AQ + QL V
Sbjct: 364 FHGQMFHGKPL-YVAIAQKKEDRKMQLQV 391
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 50.4 bits (115), Expect = 1e-06
Identities = 31/81 (38%), Positives = 44/81 (54%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQ 468
+ ++V + +DE L + FS F TVT+++V+ D G SK GFV FA+P A + Q
Sbjct: 132 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQ 191
Query: 469 SGGVMFSPLGRLRVAQAVRKQ 531
G M L VA A RK+
Sbjct: 192 LSGKMIES-KPLYVAIAQRKE 211
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQSG 474
++V + +TTD+DL F + +T+A V+ D G SK +GFV F + A V+
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 90
Query: 475 GVMF 486
G F
Sbjct: 91 GHKF 94
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQSG 474
++V T TDE L + F+ F T+T+ +V+ D +G SK GFV F++ A ++ +
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 475 GVMFSPLGR-LRVAQAVRKQ 531
G M G+ L VA A RK+
Sbjct: 390 GKMVG--GKPLYVALAQRKE 407
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/64 (34%), Positives = 36/64 (56%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQSG 474
++V S TTD++L F + ++++A V+ D G S+C+GFV F +P A V+
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 475 GVMF 486
G F
Sbjct: 287 GKKF 290
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 48.8 bits (111), Expect = 3e-06
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +1
Query: 277 TVIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRVAK 453
T H IFVG S TD L++ FS F++ + ARV++D + G S+ +GFV+F + + A+
Sbjct: 140 TSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 199
Query: 454 LIVKQSGGVMFS 489
+ + G S
Sbjct: 200 TAINEMNGKWLS 211
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 48.8 bits (111), Expect = 3e-06
Identities = 27/81 (33%), Positives = 45/81 (55%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQ 468
+ ++V + TD+ L + F+ F T+T+ +V+ D +GVS+ GFV F++P A + +
Sbjct: 327 SNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITE 386
Query: 469 SGGVMFSPLGRLRVAQAVRKQ 531
G M L VA A RK+
Sbjct: 387 MNGKMI-VTKPLYVALAQRKE 406
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQSG 474
++V S + +DE+L K F F T+ ++ D G SK +GFV F + A V
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 475 GVMF 486
G F
Sbjct: 286 GKTF 289
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 48.8 bits (111), Expect = 3e-06
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 271 FGTVIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRV 447
FG ++FVGG + T E L + F + + A VI D+ G SK YGFVTF P
Sbjct: 18 FGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77
Query: 448 AK 453
A+
Sbjct: 78 AR 79
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFASPRVAKLIV 462
++F+GG S T+++ L +F +F V A ++ DRA G ++ +GFV FA P VA+ +V
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV 64
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRVAKLIVKQ 468
+IFVGG + + T+ + K+F+ F +T V+YD R + +GF+++ S ++++
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 469 S 471
+
Sbjct: 167 T 167
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFASPRVAKLIV 462
++F+GG S T+++ L +F +F V A ++ DRA G ++ +GFV FA P VA+ +V
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV 64
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRVAKLIVKQ 468
+IFVGG + + T+ + K+F+ F +T V+YD R + +GF+++ S ++++
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 469 S 471
+
Sbjct: 167 T 167
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 48.4 bits (110), Expect = 4e-06
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Frame = +1
Query: 271 FGTVIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRV 447
FG + ++FVGG + T +++ ++F F + A +I D+ G SK YGFVTF
Sbjct: 11 FGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDS 70
Query: 448 AKLIVKQSGGVMFSPLGRLRVAQAVRKQISQLPVLGTEAAPLQASVVLPAALCSTSSSAP 627
A V V+ +A R + S G +P Q P+ ++ P
Sbjct: 71 ATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSGGPSTYTGMAAPLP 130
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 48.4 bits (110), Expect = 4e-06
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Frame = +1
Query: 271 FGTVIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRV 447
FG + ++FVGG + T +++ ++F F + A +I D+ G SK YGFVTF
Sbjct: 11 FGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDS 70
Query: 448 AKLIVKQSGGVMFSPLGRLRVAQAVRKQISQLPVLGTEAAPLQASVVLPAALCSTSSSAP 627
A V V+ +A R + S G +P Q P+ ++ P
Sbjct: 71 ATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSGGPSTYTGMAAPLP 130
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 271 FGTVIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRV 447
FG ++FVGG + T E L + F + + A VI D+ G SK YGFVTF P
Sbjct: 18 FGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEA 77
Query: 448 AK 453
A+
Sbjct: 78 AR 79
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVK 465
+RIFVGG S TD DL + FS F + +++ +R G S+ +GF+TFA R ++
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIR 66
Query: 466 QSGG 477
+ G
Sbjct: 67 EMHG 70
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 48.0 bits (109), Expect = 5e-06
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +1
Query: 277 TVIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFAS 438
T+ R+FV G S TT+E L F++F + ARVI DR +G SK +GFVT+A+
Sbjct: 30 TLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYAT 84
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 47.6 bits (108), Expect = 7e-06
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVK 465
+++FVGG S T D L + F++F VT A VI DR G S+ +GFV+F+ A +K
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 466 QSGG 477
+ G
Sbjct: 95 EMDG 98
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 47.6 bits (108), Expect = 7e-06
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVK 465
+++FVGG S T D L + F++F VT A VI DR G S+ +GFV+F+ A +K
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 466 QSGG 477
+ G
Sbjct: 95 EMDG 98
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 47.6 bits (108), Expect = 7e-06
Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVK 465
NR++VG S D L FS V ARVIYDR +G SK +GFVT+ S + + +K
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 466 QSGGVMFSPLGR-LRVAQA 519
G GR +RV++A
Sbjct: 264 SLDGADLD--GRQIRVSEA 280
Score = 35.1 bits (77), Expect = 0.041
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVKQ 468
++FVG L + F + V VIYD+ G S+ +GFVT +S + +Q
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 469 SGG 477
G
Sbjct: 152 FNG 154
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/62 (32%), Positives = 37/62 (59%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQSG 474
++V TD++L K F + +++A V+ D++G S+ +GFV F SP A + V++
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 475 GV 480
G+
Sbjct: 287 GI 288
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +1
Query: 283 IHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLI 459
+ +++F+GG S TT++ L + FS V A+++ DR + SK +GFVTFAS A+
Sbjct: 32 VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91
Query: 460 VKQSGG 477
+ + G
Sbjct: 92 LMEFNG 97
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 274 GTVIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFASPRVA 450
G + ++FVGG + T E + K F F + A VI D+A G SK YGFVTF A
Sbjct: 8 GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
Query: 451 K 453
+
Sbjct: 68 R 68
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 274 GTVIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFASPRVA 450
G + ++FVGG + T E + K F F + A VI D+A G SK YGFVTF A
Sbjct: 8 GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
Query: 451 K 453
+
Sbjct: 68 R 68
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 274 GTVIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFASPRVA 450
G + ++FVGG + T E + K F F + A VI D+A G SK YGFVTF A
Sbjct: 8 GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
Query: 451 K 453
+
Sbjct: 68 R 68
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFASPRVAKLIV 462
++F+GG S T +E L +FS + V A ++ DRA G ++ +GF+ FA P V++ ++
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64
Score = 40.7 bits (91), Expect = 8e-04
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRVAKLIVKQ 468
+IFVGG + T+E+ +F F T+ V+YD + +GF+TF S ++ +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 469 SGGVMFSPLGRLRVAQAVRKQIS 537
+ + L + V +AV K+IS
Sbjct: 171 TFHELNGKL--VEVKRAVPKEIS 191
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFASPRVAKLIV 462
++F+GG S T +E L +FS + V A ++ DRA G ++ +GF+ FA P V++ ++
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64
Score = 40.7 bits (91), Expect = 8e-04
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRVAKLIVKQ 468
+IFVGG + T+E+ +F F T+ V+YD + +GF+TF S ++ +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 469 SGGVMFSPLGRLRVAQAVRKQIS 537
+ + L + V +AV K+IS
Sbjct: 171 TFHELNGKL--VEVKRAVPKEIS 191
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFASPRVAKLIV 462
++F+GG S T +E L +FS + V A ++ DRA G ++ +GF+ FA P V++ ++
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64
Score = 40.7 bits (91), Expect = 8e-04
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRVAKLIVKQ 468
+IFVGG + T+E+ +F F T+ V+YD + +GF+TF S ++ +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 469 SGGVMFSPLGRLRVAQAVRKQIS 537
+ + L + V +AV K+IS
Sbjct: 171 TFHELNGKL--VEVKRAVPKEIS 191
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +1
Query: 277 TVIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRVAK 453
T H IFVG S TD L+ FS F + + ARV++D + G S+ +GFV+F + + A+
Sbjct: 144 TSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 203
Query: 454 LIVKQSGG 477
+ + G
Sbjct: 204 TAINEMNG 211
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 44.8 bits (101), Expect = 5e-05
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVK 465
NR++VG S D L F+ V ARVIYDR +G SK +GFVT +S + + +
Sbjct: 249 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 308
Query: 466 QSGGVMFSPLGR-LRVAQA 519
G GR +RV++A
Sbjct: 309 SLNGADLD--GRQIRVSEA 325
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVKQ 468
++FVG S L + F + V VIYD+ G S+ +GFVT ++ + +Q
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 469 SGGVMF 486
G F
Sbjct: 160 FNGYEF 165
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 44.8 bits (101), Expect = 5e-05
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVK 465
NR++VG S D L F+ V ARVIYDR +G SK +GFVT +S + + +
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 466 QSGGVMFSPLGR-LRVAQA 519
G GR +RV++A
Sbjct: 317 SLNGADLD--GRQIRVSEA 333
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVKQ 468
++FVG S L + F + V VIYD+ G S+ +GFVT ++ + +Q
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 469 SGGVMF 486
G F
Sbjct: 160 FNGYEF 165
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAK 453
++FVGG + T L +F F + A VI D+ +G SK YGFVTF P A+
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAK 453
++FVGG + T L +F F + A VI D+ +G SK YGFVTF P A+
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 44.4 bits (100), Expect = 7e-05
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +1
Query: 277 TVIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRVAK 453
T H IFVG S TD L+ FS + T + ARV++D + G S+ +GFV+F + + A+
Sbjct: 135 TSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 194
Query: 454 LIVKQSGG 477
+ + G
Sbjct: 195 TAIDEITG 202
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 44.0 bits (99), Expect = 9e-05
Identities = 27/88 (30%), Positives = 46/88 (52%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQS 471
R++VG + +++DL K F +F +V +V D G+ K +GFV FA A+ + +
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLN 345
Query: 472 GGVMFSPLGRLRVAQAVRKQISQLPVLG 555
G + + GR AV Q +++P G
Sbjct: 346 GQLEIA--GRAIKVSAVTDQ-TEVPEAG 370
Score = 31.9 bits (69), Expect = 0.38
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVKQS 471
+F +L T+ D+++FFS V R+I DR + S+ G+V F + + S
Sbjct: 184 VFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIALS 243
Query: 472 G 474
G
Sbjct: 244 G 244
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVA 450
++IFVGG S +T E L + F +F + A V+ DR +G+S+ +GFVT+ S VA
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVA 90
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVK 465
+++F+GG + + ++ L + F+ + V RVI DR G S+ +GFVTF S A ++
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 466 QSGG 477
G
Sbjct: 100 ALDG 103
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQSG 474
++V T TD+ L FS + TV++ V+ D G S+ +GFV F +P AK ++
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLC 263
Query: 475 GVMFSPLGRLRVAQAVRK 528
G+ +L V +A++K
Sbjct: 264 GLQLGS-KKLFVGKALKK 280
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVK 465
++IFVGG S +T + L + FS + V A++I DR G S+ + FVTF S A ++
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 466 QSG 474
G
Sbjct: 94 LDG 96
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVKQ 468
++FVGG S TT E +F F V + ++ DR G + +GFVTFA VA+ ++++
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTF 432
+IFVGG +++L +F + + +++YD G S+ +GFVTF
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTF 205
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 280 VIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFASPRVAKL 456
+ ++F+ G + TT E L FS++ + A VI D+ G SK YGFVTF A L
Sbjct: 72 ISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALL 131
Query: 457 IVKQ 468
+K+
Sbjct: 132 ALKE 135
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 280 VIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFASPRVAKL 456
+ ++F+ G + TT E L FS++ + A VI D+ G SK YGFVTF A L
Sbjct: 72 ISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALL 131
Query: 457 IVKQ 468
+K+
Sbjct: 132 ALKE 135
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFAS 438
+IFVGG T TDE+ ++F + VT ++YD+A + +GFV+F S
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS 160
Score = 40.7 bits (91), Expect = 8e-04
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVKQ 468
++FVGG S T ++ L + F+ + V+ A V+ D+ G + +GFV F+ P V ++++
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 469 SGGVMFSPLGRLRVAQAVRKQIS 537
+ + R +Q+S
Sbjct: 67 KHSIDTREVDVKRAMSREEQQVS 89
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 42.3 bits (95), Expect = 3e-04
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Frame = +1
Query: 283 IHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLI 459
+H +IFV G T E L + F + + + ++D+ +G SK YGF+ + S A+
Sbjct: 138 VHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNA 197
Query: 460 VKQSGGVMFSPLGRLRVAQAVRKQISQLPVLGTEAAPLQASVVLPAALCSTS 615
+KQ P ++ + S+ PV G AP+ A+ V A S S
Sbjct: 198 LKQ-------PQKKIGSRMTACQLASKGPVFG--GAPIAAAAVSAPAQHSNS 240
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 42.3 bits (95), Expect = 3e-04
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Frame = +1
Query: 283 IHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLI 459
+H +IFV G T E L + F + + + ++D+ +G SK YGF+ + S A+
Sbjct: 138 VHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNA 197
Query: 460 VKQSGGVMFSPLGRLRVAQAVRKQISQLPVLGTEAAPLQASVVLPAALCSTS 615
+KQ P ++ + S+ PV G AP+ A+ V A S S
Sbjct: 198 LKQ-------PQKKIGSRMTACQLASKGPVFG--GAPIAAAAVSAPAQHSNS 240
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 42.3 bits (95), Expect = 3e-04
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Frame = +1
Query: 283 IHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLI 459
+H +IFV G T E L + F + + + ++D+ +G SK YGF+ + S A+
Sbjct: 138 VHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNA 197
Query: 460 VKQSGGVMFSPLGRLRVAQAVRKQISQLPVLGTEAAPLQASVVLPAALCSTS 615
+KQ P ++ + S+ PV G AP+ A+ V A S S
Sbjct: 198 LKQ-------PQKKIGSRMTACQLASKGPVFG--GAPIAAAAVSAPAQHSNS 240
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFA 435
+++F+GG S + ++ L FS+F V R+ YD+ +G S+ +GFV FA
Sbjct: 41 SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFA 90
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTF 432
N +FV + T DEDL FS F TV +A VI D + G S CY F+ F
Sbjct: 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEF 291
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVKQ 468
R++VG S TTTD+ L + FS + V A V+ DR S+ +GFVT++S A+ V
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 469 SGG 477
G
Sbjct: 64 MDG 66
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTF 432
+IFVG + TT +DL ++F F V A V+ + G SK YGF+TF
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITF 60
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVA 450
+IFVGG + T + + ++F F + A VI D+ G SK YGFVTF A
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAA 76
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 41.5 bits (93), Expect = 5e-04
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVKQ 468
++++GG S T + L FS+F VT ARV+ ++ G S+ YGFV F S A +
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 469 SGGVMFSPLGRLRVAQAVRKQISQLPV 549
G L ++ V K LP+
Sbjct: 92 MNG---QELNGFNISVNVAKDWPSLPL 115
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 328 DEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFASPRVAKLIVKQSGG 477
D++L F +F V +A+V D+A GVSKC+GFV++ S A+ + G
Sbjct: 362 DQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNG 412
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVKQ 468
+IF+GG TT+ K F + +T + ++ DR G + +GF+TFA P V +++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 469 S 471
+
Sbjct: 80 T 80
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRV 447
+IFVGG T T+++L FF+ + V +VI D S+ +GFV F S V
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEV 162
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVKQ 468
+IF+GG TT+ K F + +T + ++ DR G + +GF+TFA P V +++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 469 S 471
+
Sbjct: 80 T 80
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRV 447
+IFVGG T T+++L FF+ + V +VI D S+ +GFV F S V
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEV 162
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/62 (29%), Positives = 34/62 (54%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQSG 474
++V +++L K F F +++A V+ D++G S+C+GFV F A V++
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 475 GV 480
G+
Sbjct: 291 GI 292
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFASPRVAKLIVKQS 471
+F+ D++L F F V +A+V D+A G+SKC+GF+++ S A+ +
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 400
Query: 472 GGVMFS 489
G S
Sbjct: 401 NGCQLS 406
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFASPRVAKLIVKQS 471
+F+ D++L F F V +A+V D+A G+SKC+GF+++ S A+ +
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 391
Query: 472 GGVMFS 489
G S
Sbjct: 392 NGCQLS 397
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVKQ 468
+IFVGG + TT + K F + +T + ++ DR G + +GFVT+A V +++
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 469 S 471
+
Sbjct: 103 N 103
Score = 36.3 bits (80), Expect = 0.018
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFAS 438
+IFVGG + D++ +FF F + +++ D + G S+ +GFVT+ S
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYES 180
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 40.7 bits (91), Expect = 8e-04
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 283 IHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLI 459
+ R FVGG + T D L F+ + V +++I DR G S+ +GFVTF + K
Sbjct: 6 VEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDA 65
Query: 460 VKQSGG 477
++ G
Sbjct: 66 IEGMNG 71
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 40.7 bits (91), Expect = 8e-04
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 283 IHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLI 459
+ R FVGG + T D L F+ + V +++I DR G S+ +GFVTF + K
Sbjct: 6 VEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDA 65
Query: 460 VKQSGG 477
++ G
Sbjct: 66 IEGMNG 71
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 283 IHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLI 459
+ +RIFVGG S T+ L F + +T +++ R G + +GF+TF R A
Sbjct: 10 LESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDA 69
Query: 460 VKQSGG 477
+K G
Sbjct: 70 IKHMHG 75
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 283 IHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLI 459
+ +RIFVGG S T+ L F + +T +++ R G + +GF+TF R A
Sbjct: 10 LESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDA 69
Query: 460 VKQSGG 477
+K G
Sbjct: 70 IKHMHG 75
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 40.7 bits (91), Expect = 8e-04
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +1
Query: 274 GTVIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFAS-PRVA 450
G I+ IFVGG + TDEDL + FS F + + ++ V K GFV F + P
Sbjct: 301 GDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI-----PVGKGCGFVQFVNRPNAE 355
Query: 451 KLIVKQSGGVMFSPLGRL 504
+ + K +G V+ RL
Sbjct: 356 EALEKLNGTVIGKQTVRL 373
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVKQ 468
R+++G T T+E L K V +V+YD+ +G S+ +GF T S A +V++
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 469 SGG 477
G
Sbjct: 137 LNG 139
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 280 VIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFASPRVAKL 456
V H +IFV G TT E L F + + V+ D+A G +K +GFV F + + AK
Sbjct: 101 VTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKE 160
Query: 457 IVKQ 468
+K+
Sbjct: 161 ALKE 164
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 280 VIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFASPRVAKL 456
V H +IFV G TT E L F + + V+ D+A G +K +GFV F + + AK
Sbjct: 101 VTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKE 160
Query: 457 IVKQ 468
+K+
Sbjct: 161 ALKE 164
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTF 432
R F+GG + TT+D L F + + A+V+ D+ +G S+ +GF+TF
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITF 55
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +1
Query: 280 VIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKL 456
+ IFV GF TT E+L F ++ + V+ D+ G K YGFV F + + A+
Sbjct: 405 IAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGARE 464
Query: 457 IVKQSGGVMFS 489
+K+ M++
Sbjct: 465 ALKRPEKRMYN 475
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTF 432
+I+VGG TT E L FF F + V+ DR S+ YGFVTF
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTF 61
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 283 IHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRVAKLI 459
I ++FV S TTD+ L + FS F + AR+I D K +GF+TF S A+
Sbjct: 5 ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64
Query: 460 VKQSGG 477
+K G
Sbjct: 65 LKSLDG 70
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFAS 438
+++FVG S T T E L F V ARV++D G S+ YGFV ++S
Sbjct: 177 HKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSS 227
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 274 GTVIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFAS-PRVA 450
G +++ IFVGG + TDEDL + F+ F + + ++ V K GFV F + P
Sbjct: 299 GDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI-----PVGKGCGFVQFVNRPNAE 353
Query: 451 KLIVKQSGGVMFSPLGRL 504
+ + K +G V+ RL
Sbjct: 354 EALEKLNGTVIGKQTVRL 371
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRVAKLIVKQ 468
+IFVGG + + T+ + K+F+ F +T V+YD R + +GF+++ S ++++
Sbjct: 34 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 93
Query: 469 S 471
+
Sbjct: 94 T 94
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFASPRVAKLIVK 465
++F+GG S T + L ++FS F V V+ ++A G + +GFV F+ P V +++
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ 65
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGV-SKCYGFVTFASPRVAKLIVKQ 468
+IFVGG T ++ +F T+ V+ A ++ D+ + +GFV+F S L++ +
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHK 170
Query: 469 S 471
+
Sbjct: 171 T 171
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVKQ 468
+IFVGG S TT+E+ +F F T V++D + +GFVT+ S + +V Q
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVE-VVMQ 179
Query: 469 SGGVMFSPLGRLRVAQAVRKQ 531
S S R+ V +A+ K+
Sbjct: 180 SNFHELSD-KRVEVKRAIPKE 199
Score = 37.5 bits (83), Expect = 0.008
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVKQ 468
++FVGG + T++E L ++FS + V A V ++ G + +GFV FA+ ++
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 469 SGGVMFSPLGRLRVAQAVRK-QISQLP 546
+ ++ P+ V +A+RK ++ Q P
Sbjct: 67 THFILGKPVD---VRKAIRKHELYQQP 90
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 280 VIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKL 456
++H +IFV G T + L F + + + + D+ +G SK YGF+ F S A+
Sbjct: 125 LVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARN 184
Query: 457 IVKQ 468
+KQ
Sbjct: 185 ALKQ 188
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 38.7 bits (86), Expect = 0.003
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFA-SPRVAKLIVKQS 471
++V + + L + FS F T+T+ +V+ G+SK GFV F+ S +K ++K +
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 472 GGVMFSPLGRLRVAQAVRKQISQL------PVLGTEAAPLQASVVLPAALCS 609
G ++ + + +AQ + L P P+ + VV PA + S
Sbjct: 285 GKMVGNKPIYVSLAQCKEQHKLHLQTQFNNPPPSPHQQPIFSQVVAPATMLS 336
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFAS 438
+FV + ++ L FS F V + +V D +GVSK YGFV F S
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYS 80
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +1
Query: 319 TTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIV 462
T DED+ +FS F TV R+ Y + + +GFV+FA P K+++
Sbjct: 270 TFKDEDVATYFSLFGTVQDVRIPYQQ---KRMFGFVSFAHPETVKVVL 314
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRVAKLIVKQ 468
+IFVGG + T+ + +F F T+ V+YD + +GF+TF S +++ +
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 182
Query: 469 SGGVMFSPLGRLRVAQAVRKQIS 537
+ + + + V +AV K++S
Sbjct: 183 TFHELNGKM--VEVKRAVPKELS 203
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 271 FGTVIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRV 447
FG ++FVGG + T E ++ F + + A +I D+ SK YGFVTF +
Sbjct: 11 FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKA 70
Query: 448 A 450
A
Sbjct: 71 A 71
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRVAKLIVK 465
N + V S T + DL + F F VT V D + GVS+ +GFV F S A+ +
Sbjct: 213 NSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAIN 272
Query: 466 QSGGVMFSPL 495
+ G + L
Sbjct: 273 KLNGYGYDNL 282
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 37.5 bits (83), Expect = 0.008
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVI-YDRAGVSKCYGFVTFASPRVAKLIVKQS 471
+FV GFS + ++ L K FS F VT ++I +R S YG+V F S A+ V+
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 138
Query: 472 GGVMF 486
G F
Sbjct: 139 NGKFF 143
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAK 453
R++VG T T +L + F TV +++YD+ S+ +GFVT S AK
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAK 171
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 36.7 bits (81), Expect = 0.013
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVI-YDRAGVSKCYGFVTFASPRVAKLIVKQS 471
+FV GFS + ++ L K FS F VT ++I +R S YG+V F S A+ V+
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 119
Query: 472 GGVMFS 489
G + S
Sbjct: 120 NGKVHS 125
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 36.7 bits (81), Expect = 0.013
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +1
Query: 286 HNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVA-KLIV 462
++ IFVGG T+EDL + FS F V + ++ V K GFV FA+ + A + I
Sbjct: 326 NSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKI-----PVGKGCGFVQFANRQSAEEAIG 380
Query: 463 KQSGGVMFSPLGRLRVAQAVRKQ 531
+G V+ RL ++ KQ
Sbjct: 381 NLNGTVIGKNTVRLSWGRSPNKQ 403
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFAS 438
++++VG T + L FS F T+ + RV++DR G ++ + F++F S
Sbjct: 212 HKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTS 262
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 36.3 bits (80), Expect = 0.018
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQSG 474
+FV S T D++ FF+ V + R++ + G YGFV FAS K ++
Sbjct: 246 LFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKN 305
Query: 475 G 477
G
Sbjct: 306 G 306
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQSG 474
+FV S T + KFF A V R+I + G GFV FAS A+ +++
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMN 550
Query: 475 G 477
G
Sbjct: 551 G 551
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 36.3 bits (80), Expect = 0.018
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQS 471
++++ ++ED+ + FS + + YDR+G SK V F+ A VK+
Sbjct: 109 KLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRY 168
Query: 472 GGVMFSPLGRLRVAQAVRKQIS--QLPVLGTEAAPLQASVVL 591
V G+L + V +S LP+L T P + +L
Sbjct: 169 NNVQLD--GKLMKIEIVGTNLSAPALPILATAQIPFPTNGIL 208
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 35.9 bits (79), Expect = 0.024
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 283 IHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD--RAGVSKCYGFVTFASPRVAKL 456
I N+IFVG + +DL +F F + A + D R+G + +GFVTFA VA
Sbjct: 238 IGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSG-HRGFGFVTFAENGVADR 296
Query: 457 IVKQS 471
+ ++S
Sbjct: 297 VARRS 301
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 283 IHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTFASPRVAKLI 459
+ ++ V G + L + S F + V+ DR+ G S+ +G+VTFAS AK
Sbjct: 1 MERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA 60
Query: 460 VK 465
+K
Sbjct: 61 LK 62
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 35.9 bits (79), Expect = 0.024
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFA 435
R++VG + L + FS V ARV+YDR G S+ +GFVT +
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMS 293
Score = 34.3 bits (75), Expect = 0.072
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVKQ 468
++FVG + + L F TV A VIY+R S+ +GFVT +S A+ V++
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 35.5 bits (78), Expect = 0.031
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVK 465
+RIFVGG T+ + + +F + ++ DR G SK Y F + P V +
Sbjct: 375 DRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACA 434
Query: 466 QSGGVMFSPLGRLRVAQAVRKQISQLP 546
G+ L V +A++ I P
Sbjct: 435 ALNGIKMGD-KTLTVRRAIQGAIQPKP 460
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 35.5 bits (78), Expect = 0.031
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARV-IYDRAGVSKCYGFVTFASPRVAKLIVK 465
IFV + T E L + F F +T + + C+GFVTFAS KL+++
Sbjct: 279 IFVANLLMDATPEQLNETFKGFGAITKDGIQVRSYRLKGNCFGFVTFASAEAVKLVLQ 336
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 35.1 bits (77), Expect = 0.041
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVKQ 468
R+FV T T+E+L + FSTF ++ ++ D+ S+ ++ + P A +++
Sbjct: 262 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEE 321
Query: 469 SGGVMFSPLGR-LRVAQAVRKQISQLPVLGTEAAP 570
F GR L + A ++ S V T P
Sbjct: 322 LDNSSFQ--GRLLHILPAKHRETSDKQVNDTSNLP 354
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 35.1 bits (77), Expect = 0.041
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 328 DEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIV 462
+ED+ +FSTF V R+ Y + + +GFVTF P K I+
Sbjct: 272 EEDVSNYFSTFGPVQDVRIPYQQ---KRMFGFVTFVYPETVKSIL 313
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 34.7 bits (76), Expect = 0.054
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +1
Query: 328 DEDLWKFFSTFATVTAARVIYDRA-GVSKCYGFVTF 432
D++L F +F V +A+V D+A GVSKC+G ++F
Sbjct: 361 DQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 34.7 bits (76), Expect = 0.054
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 271 FGTVIHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGV-SKCYGFVTFASPRV 447
F + +FV G S ++T+E L + FS + V VI D+ K + +VTF+S
Sbjct: 15 FSRSFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEE 74
Query: 448 AK 453
A+
Sbjct: 75 AE 76
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 34.3 bits (75), Expect = 0.072
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVK 465
+ +F+GG +EDL + R++ DR +G SK Y FV F + VA+ ++
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 466 Q 468
+
Sbjct: 176 E 176
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 34.3 bits (75), Expect = 0.072
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 328 DEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIV 462
+ED+ +FSTF V R+ Y + + +GFVTF P K I+
Sbjct: 169 EEDVSDYFSTFGPVQDVRIPYQQ---KRMFGFVTFMYPETVKSIL 210
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 34.3 bits (75), Expect = 0.072
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQSG 474
IFVGG DEDL + FS F V + ++ V K GFV FA + A+ ++
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKI-----PVGKGCGFVQFADRKSAEDAIESLN 377
Query: 475 GVM 483
G +
Sbjct: 378 GTV 380
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 34.3 bits (75), Expect = 0.072
Identities = 21/73 (28%), Positives = 32/73 (43%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQSG 474
+F G S D+ FF V R+ G K YG + FASP A+ ++ +G
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALEMNG 445
Query: 475 GVMFSPLGRLRVA 513
++ RL +A
Sbjct: 446 KLLLGRDVRLDLA 458
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 33.9 bits (74), Expect = 0.095
Identities = 15/57 (26%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIV 462
+ V G S+ +T+EDL++ + + + RVI ++ +G+S+ + F+ F + A+ ++
Sbjct: 300 VVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMM 356
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 33.9 bits (74), Expect = 0.095
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRVAKLIVKQ 468
IFVG ++EDL K F VT R++ + + SK F+ FA+ AK VK+
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
>At1g51520.2 68414.m05799 expressed protein contains a weak hit to
PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 513
Score = 33.9 bits (74), Expect = 0.095
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 325 TDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIV 462
TDED+ +F F V R+ Y + + YGFVTFA + I+
Sbjct: 279 TDEDVSTYFRDFGLVDDVRIPYQQ---QRMYGFVTFAKAETVRTIL 321
>At1g51520.1 68414.m05798 expressed protein contains a weak hit to
PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 414
Score = 33.9 bits (74), Expect = 0.095
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 325 TDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIV 462
TDED+ +F F V R+ Y + + YGFVTFA + I+
Sbjct: 279 TDEDVSTYFRDFGLVDDVRIPYQQ---QRMYGFVTFAKAETVRTIL 321
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 31.5 bits (68), Expect = 0.51
Identities = 23/84 (27%), Positives = 37/84 (44%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQS 471
R+ VGG + +DL K FS TV A + + F ++ + KL +
Sbjct: 11 RLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYN 70
Query: 472 GGVMFSPLGRLRVAQAVRKQISQL 543
G V GRLR+ +A +++L
Sbjct: 71 GCVWKG--GRLRLEKAKEHYLARL 92
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 346 FFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQSGG 477
FF+ V + R+I YGFV FASP +A + +++ G
Sbjct: 701 FFNDVGEVVSVRLIVSPESKHVGYGFVEFASPCLANMALEKKNG 744
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +1
Query: 334 DLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQSGG 477
D+ FF V + ++ R G+ GFV FAS AK + G
Sbjct: 579 DIIDFFKDVGQVVSVQLTTKRNGLRLSTGFVEFASANEAKKALDMKNG 626
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVK 465
++VGG ++E LW+ F V V DR + + YGF+ + S A +K
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIK 84
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 31.5 bits (68), Expect = 0.51
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQSG 474
+ V S T + FF+ A V + R++ + G YGFV FAS A +++
Sbjct: 160 VIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKN 219
Query: 475 G 477
G
Sbjct: 220 G 220
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +1
Query: 283 IHNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIV 462
I +FV + D+ FF V R+I + G +GFV FAS A+ +
Sbjct: 245 ITKTLFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQGKHAGWGFVEFASANEAEKAL 304
Query: 463 KQSG 474
++G
Sbjct: 305 VKNG 308
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 31.1 bits (67), Expect = 0.67
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVKQ 468
++FVG + L F TV + VIY+R S+ +GFVT ++ A+ V++
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Score = 30.7 bits (66), Expect = 0.88
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVKQ 468
RI+VG L + FS V ARV+ DR G S+ +GFV ++ + +
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 469 SGG 477
G
Sbjct: 268 LDG 270
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 31.1 bits (67), Expect = 0.67
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQSG 474
+FVGG + TD+ L FS + + ++ AG +C GFV F+ A+ ++
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKI---PAG-KRC-GFVQFSEKSCAEEALRMLN 317
Query: 475 GV 480
GV
Sbjct: 318 GV 319
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRVAKLIVKQ 468
++FVG T T+E++ +F V +I D R G + FV +A+ + A ++
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 469 SGGVMFSPLG----RLRVAQAVRKQISQL 543
+ P G ++R A R++I L
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTL 209
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Frame = +1
Query: 292 RIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYD-RAGVSKCYGFVTFASPRVAKLIVKQ 468
++FVG T T+E++ +F V +I D R G + FV +A+ + A ++
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 469 SGGVMFSPLG----RLRVAQAVRKQISQL 543
+ P G ++R A R++I L
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTL 209
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKC 414
N+IF+GGFS + E L + S F + A R + + +C
Sbjct: 40 NKIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLNQRC 81
>At2g41780.1 68415.m05164 expressed protein
Length = 127
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +1
Query: 451 KLIVKQSGGVMFSPLGRLRVAQAVRKQISQLPVLGTEAAPLQASVVLPAA 600
K+I+ +MF+ RL V +A R ++ L +G+EA+ + ++V P +
Sbjct: 51 KIIMNHDQQLMFNEDHRLAVKKASRSEMVDLEGMGSEASVIMSNVPQPTS 100
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVK 465
+RIFVGG T+ + + +F + ++ DR G SK Y F + V +
Sbjct: 359 DRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 418
Query: 466 QSGGV 480
G+
Sbjct: 419 ALNGI 423
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVK 465
+RIFVGG T+ + + +F + ++ DR G SK Y F + V +
Sbjct: 359 DRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 418
Query: 466 QSGGV 480
G+
Sbjct: 419 ALNGI 423
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 289 NRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVAKLIVK 465
+RIFVGG T+ + + +F + ++ DR G SK Y F + V +
Sbjct: 359 DRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 418
Query: 466 QSGGV 480
G+
Sbjct: 419 ALNGI 423
>At3g47010.1 68416.m05105 glycosyl hydrolase family 3 protein
beta-D-glucan exohydrolase, Nicotiana tabacum,
TREMBL:AB017502_1
Length = 581
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Frame = -1
Query: 414 TLGNACPIVDDPRGRHCRESREELPQV------FISGRQGEAPHKYP 292
T ++ DPR C ES E ++ ISG QGE P ++P
Sbjct: 121 TFAPCVAVLGDPRWGRCYESYSEAAKIVCEMSLLISGLQGEPPEEHP 167
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVI-YDRAGVSKCYGFVTFASPR 444
+FVG S TT++ L + S + + R++ + G S+ YGFV + + +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEK 116
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTFASPRVA 450
+FVG T+E L + V + R++ DR G K YGF + A
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETA 63
>At5g01210.1 68418.m00026 transferase family protein contains Pfam
profile PF02458 transferase family
Length = 475
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +1
Query: 277 TVIHNRIFVG-GFSLTTTD-EDLWKFFSTFATVTA 375
T +H+ +F+G + + TD W FF+TFA VT+
Sbjct: 148 TELHDGVFIGCTVNHSVTDGTSFWHFFNTFADVTS 182
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 286 HNRIFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDR-AGVSKCYGFVTF 432
+NR+++G + TT+ D+ K FS + + R+ ++ G K Y V F
Sbjct: 261 YNRVYIGNLAWDTTERDIRKLFSD-CVINSVRLGKNKETGEFKGYAHVDF 309
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 164 PPATERAPTPMKS*RLY*IPPKTTQKTPCRPPMPL-NSG 277
PP T+ AP P PP + P PPMP+ NSG
Sbjct: 555 PPGTQAAPPPPP-------PPPMQNRAPSPPPMPMGNSG 586
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKC-YGFVTFASPRVAKLIVKQS 471
+++G S TT+E L++ FS + + D+ + C + FV F S + VK
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYI 95
Query: 472 GGVM 483
G +
Sbjct: 96 SGTI 99
>At1g30160.1 68414.m03687 expressed protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 311
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 189 VGALSVAGGAFLDHMRATSRFASYITFYVLHFITKLVHVPLFTKLLS 49
VGA S G F D ++ + Y+ Y K++H+P FT + S
Sbjct: 20 VGA-SHGWGLFSDRTNRSALISDYLNPYASKSKPKMIHLPFFTPMYS 65
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQ 468
+FVG F T DL + F + V DR + Y FV F R A+ +++
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRV-------DRVDMKSGYAFVYFEDERDAEDAIRK 54
>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 536
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 325 TDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIV 462
T+ D+ +F+++ V R+ + + YGFVTFAS K I+
Sbjct: 330 TEHDVSIYFTSYGHVEDVRIPCQQ---KRMYGFVTFASSETVKHIL 372
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 27.5 bits (58), Expect = 8.2
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQSG 474
IFVGG TD++L F F +++ + K GFV +A+ A+ +
Sbjct: 262 IFVGGLDANVTDDELKSIFGQF-----GELLHVKIPPGKRCGFVQYANKASAEHALSVLN 316
Query: 475 GVMFSPLG-RLRVAQAVRKQISQ 540
G RL ++ KQ Q
Sbjct: 317 GTQLGGQSIRLSWGRSPNKQSDQ 339
>At3g45660.1 68416.m04933 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 557
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +1
Query: 340 WKFFSTF--ATVTAARVIYDRAGVSKCYGFVTFASPRVAKLIVKQSGGVMF---SPLG 498
W FF+ + A+++A ++Y +S +GF + + LIV SG + PLG
Sbjct: 180 WFFFTWYLAASISATAIVYAEENISWSFGFGLCVAANLLGLIVFISGKKFYKHDKPLG 237
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +2
Query: 158 KAPPATERAPTPMKS*RLY*IPPKTTQKTPCRPPMP 265
K PP P P+ S IPP Q P RPP P
Sbjct: 570 KTPPPPPPPPPPLPSRS---IPPPLAQPPPPRPPPP 602
>At1g26330.1 68414.m03211 hypothetical protein
Length = 1196
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 64 KQGNMH*FGYKMENVKRYIRSESASCAHMVEEGSASNRKS 183
K G M FG+K V+R +R E + +H + E S S+R S
Sbjct: 113 KMGGMEFFGFKNPLVQRLLR-ELVTNSHGMVESSPSSRAS 151
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 295 IFVGGFSLTTTDEDLWKFFSTFATVTAARVIYDRAGVSKCYGFVTFA 435
+FVGG + TD+ L FS + + ++ AG +C GFV F+
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKI---PAG-KRC-GFVQFS 304
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,340,634
Number of Sequences: 28952
Number of extensions: 297671
Number of successful extensions: 984
Number of sequences better than 10.0: 137
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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