Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30798
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 388 e-109
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 219 4e-58
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 208 7e-55
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 157 2e-39
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 114 1e-26
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 107 1e-24
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 103 2e-23
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 66 5e-12
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 53 3e-08
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 38 0.002
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.14
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.14
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.44
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 27 2.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.3
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 3.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 4.1
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 4.1
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 4.1
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 26 5.4
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 7.2
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 25 7.2
SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr... 25 9.5
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 25 9.5
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 9.5
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 388 bits (956), Expect = e-109
Identities = 178/192 (92%), Positives = 186/192 (96%)
Frame = +3
Query: 72 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 251
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 252 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAXREKMTQ 431
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+ REKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 432 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 611
I+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLA
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLA 181
Query: 612 GRDLTDYLMKIL 647
GRDLTDYLMKIL
Sbjct: 182 GRDLTDYLMKIL 193
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 219 bits (534), Expect = 4e-58
Identities = 97/183 (53%), Positives = 136/183 (74%), Gaps = 1/183 (0%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 269
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 270 KYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKAXREKMTQIMFET 446
+ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL +EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 447 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 626
N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+T
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVT 191
Query: 627 DYL 635
DYL
Sbjct: 192 DYL 194
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 208 bits (507), Expect = 7e-55
Identities = 97/192 (50%), Positives = 137/192 (71%), Gaps = 2/192 (1%)
Frame = +3
Query: 78 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 251
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 252 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAXREKMTQ 431
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP A REKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 432 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 611
MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+A
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVA 181
Query: 612 GRDLTDYLMKIL 647
GRD T YL+ +L
Sbjct: 182 GRDATRYLISLL 193
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 157 bits (380), Expect = 2e-39
Identities = 87/218 (39%), Positives = 124/218 (56%), Gaps = 32/218 (14%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 218
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 219 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 377
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 378 LLTEAPLNPKAXREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDS 533
LLTE PLNP RE +IMFE+FN +Y+A+QAVL+L AS + TG V+DS
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDS 186
Query: 534 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 647
GDGV+H +P+ EGY + +I + LAGRD+T ++ +L
Sbjct: 187 GDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLL 224
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 114 bits (274), Expect = 1e-26
Identities = 59/188 (31%), Positives = 106/188 (56%), Gaps = 3/188 (1%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 269
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 270 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAXREKMTQIMFET 446
+ P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 447 FNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 620
+N P++ I + S Y + + ++GIVL+ G+ SH +P+ G + R+ G
Sbjct: 142 YNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQ 201
Query: 621 LTDYLMKI 644
+ YL+K+
Sbjct: 202 SSSYLLKL 209
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 107 bits (258), Expect = 1e-24
Identities = 63/191 (32%), Positives = 97/191 (50%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 255 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAXREKMTQI 434
G + +K I +G V NWD +W + +L+ P EHP+L+TE NP R K +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 435 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 614
MFE+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L +G
Sbjct: 121 MFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSG 180
Query: 615 RDLTDYLMKIL 647
+ D L + L
Sbjct: 181 NAINDILAQTL 191
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 103 bits (247), Expect = 2e-23
Identities = 53/182 (29%), Positives = 98/182 (53%), Gaps = 2/182 (1%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 255 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAXREKMT 428
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 429 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 608
+ FE + PA Y+ QAV +A+ ++T +++D G + P+ +G + I + L
Sbjct: 122 EAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSL 181
Query: 609 AG 614
AG
Sbjct: 182 AG 183
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 65.7 bits (153), Expect = 5e-12
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Frame = +3
Query: 276 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKAXREKMTQIMFE 443
PI+ G V +W+ ++ W H Y+ L P + +PV L RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 444 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 623
P +A + ++ LYA G G+V+D G + PI +G + A +L L GR +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231
Query: 624 TDYLMKIL 647
T +L +L
Sbjct: 232 TQHLQNLL 239
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 53.2 bits (122), Expect = 3e-08
Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 18/205 (8%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 269
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 270 KYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKAXREKMTQIM 437
++ H G + +W +W N + P ++ +LLT+ + Q++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 438 FETFNTPAMYVAIQAVLSLYASGRTT--------------GIVLDSGDGVSHTVPIYEGY 575
FE F A A L + G T +V+DSG +H +P+ +
Sbjct: 118 FEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPVIDFS 177
Query: 576 ALPHAILRLDLAGRDLTDYLMKILT 650
A+ R+D+ G+ LT+YL ++++
Sbjct: 178 VQEQAVKRVDVGGKLLTNYLKEVIS 202
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 37.5 bits (83), Expect = 0.002
Identities = 28/139 (20%), Positives = 65/139 (46%), Gaps = 12/139 (8%)
Frame = +3
Query: 267 LKYPIEHGIVTNWD---------DMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKA 410
L YPI+ G+ D D+ +I+ ++ + L++ + + V+ L +
Sbjct: 198 LFYPIKSGVFNESDYASSQQLLADIYEIFKYSITSLLQIPVSQLSQYSVIFIVPDLYDRV 257
Query: 411 XREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 590
EK+ I+F + + +++ + + +G + V+D G + + EG +P++
Sbjct: 258 YVEKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNS 317
Query: 591 ILRLDLAGRDLTDYLMKIL 647
++++ G D+T MK+L
Sbjct: 318 RIKINYGGDDITLLFMKLL 336
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.1 bits (67), Expect = 0.14
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = +3
Query: 336 FYNELRVAPEEHPVLLTE--APLNPKAXREKMTQIMFETFNTPAM---YVAIQ 479
+Y L E+HP+LLT+ A L P+ ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.14
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 135 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 278
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.44
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 232 PTYESFCPM-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 71
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
Score = 28.3 bits (60), Expect = 1.0
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +1
Query: 448 STRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYPSTRDTHSLTPSCVWTWPVATSQ 627
ST PP S S + + + SC T ++ PT +T T ++ P+ T T+
Sbjct: 368 STPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNC 427
Query: 628 TTS 636
TTS
Sbjct: 428 TTS 430
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/62 (33%), Positives = 26/62 (41%)
Frame = +1
Query: 448 STRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYPSTRDTHSLTPSCVWTWPVATSQ 627
ST P T S S P VPP S T +T P P ST T + + T T+
Sbjct: 175 STSIPPTGGSSSLSTPITPTVPPTS--TSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTS 232
Query: 628 TT 633
T+
Sbjct: 233 TS 234
Score = 27.1 bits (57), Expect = 2.3
Identities = 21/62 (33%), Positives = 26/62 (41%)
Frame = +1
Query: 448 STRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYPSTRDTHSLTPSCVWTWPVATSQ 627
ST P T S S P VPP S T +T P P ST T + + T T+
Sbjct: 118 STSIPPTGGSSSLSTPITPTVPPTS--TSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTS 175
Query: 628 TT 633
T+
Sbjct: 176 TS 177
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 378 LLTEAPLNPKAXREKMTQIMFETFN 452
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +1
Query: 460 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYPSTRDTHSLTPS 594
P T+P P T PV P S P+ P P PS+ PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = +1
Query: 457 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSP-TPYPSTRDTHSLTPS 594
PP T+P P P VP + P +P + PS S PS
Sbjct: 1212 PPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPS 1258
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 481 PCSRCTRPVVPPVSCWTPATVSPTPYPSTRDTHSLTPSCV 600
P SR T+P+ S +P VSP PST ++ + V
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPSTTSGEAIPENFV 301
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 235 SPTYESFC--PMPTITP*WRGLPTIEGNTARGASSPAKPAL 119
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 392 SPQPQGXQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 541
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 457 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYPS 564
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 129 NRPCTYRSHCLLPTRQLP 76
NRP YRSH + TR+ P
Sbjct: 323 NRPSNYRSHSSMGTRRSP 340
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 7.2
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -2
Query: 259 IPLLLCASSPTYESFCPMPTI-TP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAA 83
IP L ++P +F P P++ +P + T +TA ++SP L P + TN +
Sbjct: 363 IPSPLQNTNPAPSTF-PNPSVASPAFPNSSTSNPSTAPASASPLASTLK-PSTANDTNGS 420
Query: 82 TSSS 71
+SSS
Sbjct: 421 SSSS 424
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 497 RVRSYHRYRAGLRRRCLPHRTHL 565
R RS HR+ G RR P+RTHL
Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHL 162
>SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
3|||Manual
Length = 171
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 402 PKAXREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 545
P+ E ++I F + Y+AI A+L +YA R +++ G GV
Sbjct: 44 PRNFSEAQSRISFNFSRFSSNYLAIIAMLVIYALIRNPLLLIVIGIGV 91
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 502 PVVPPVSCW-TPATVSPTPYPSTRDTHSLTPSCVWTWP 612
P +PP + TP+T S P + DT+ L P+ + + P
Sbjct: 85 PAIPPSMNYPTPSTPSVLPESFSNDTNLLDPAALPSAP 122
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 478 KPCSRCTRPVVPPVSCWTPATVSPTPYP 561
KP S+ TRP +P + T +V P P P
Sbjct: 65 KPSSKATRPYIPSYTRLT-YSVPPLPIP 91
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 195 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 281
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,218
Number of Sequences: 5004
Number of extensions: 64590
Number of successful extensions: 245
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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