Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30797
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46027| Best HMM Match : Fibrinogen_C (HMM E-Value=0.24)             28   6.2  
SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)               27   8.2  
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_46027| Best HMM Match : Fibrinogen_C (HMM E-Value=0.24)
          Length = 901

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 424 YWKLNNILNTYIIVSSLENIPVYICIYTK 338
           YWK +N+ NT  I   L+N  + +  Y+K
Sbjct: 439 YWKNHNVYNTESIADGLDNSDMKLHTYSK 467


>SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)
          Length = 1084

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 292 CAFCGNCFVILNRSQSHDACYLILLRIPRRWV*IVRLCNN 173
           C +CG  F   N  ++H  C+      P RW   +R CN+
Sbjct: 652 CVYCGKTFARSNVLKAHVRCH---TGNPNRWDVRMRACND 688


>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -3

Query: 376 LENIPVYICIYTKPTNHSS--MFTXKP*LTCAFCGNCFVILNRSQS--HDACYLILLRIP 209
           + NI  +  I  +  NH S  M+T +P LTC+ C +    +N       + C+L+   I 
Sbjct: 793 INNIKTFGVIVQEYVNHDSFEMYTKRPPLTCSSCTSSRRRINTCTGLPIERCFLVYCSIE 852

Query: 208 RR 203
            R
Sbjct: 853 GR 854


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,445,083
Number of Sequences: 59808
Number of extensions: 340038
Number of successful extensions: 671
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)