Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30797
         (570 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50870.1 68416.m05570 zinc finger (GATA type) family protein ...    29   1.7  
At5g35040.1 68418.m04139 hypothetical protein includes At2g24900...    29   2.9  
At3g62740.1 68416.m07048 glycosyl hydrolase family 1 protein con...    29   2.9  

>At3g50870.1 68416.m05570 zinc finger (GATA type) family protein
           Arabidopsis thaliana mRNA for GATA transcription factor
           3, PID:e1254739
          Length = 295

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 11  NFWDFTRLRDSNTVASLYTNTPDILSFRPRR 103
           NFWD    +++N+  + Y N P   + +P R
Sbjct: 101 NFWDLIHTKNNNSKTAPYNNVPSFSANKPSR 131


>At5g35040.1 68418.m04139 hypothetical protein includes At2g24900,
           At5g35040, At3g30500, At4g07690
          Length = 236

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 3   QIIIFGILPACG-IRTPLHRYIRIHRTSYPLGHGDFNDN 116
           +I  FG++  CG +RT  H+Y+     +  L H D  +N
Sbjct: 72  EIRTFGVIENCGFVRTTTHKYMIEFMNATELNHSDPREN 110


>At3g62740.1 68416.m07048 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; similar to hydroxyisourate hydrolase
           (GI:19569603) [Glycine max]
          Length = 502

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 20/54 (37%), Positives = 24/54 (44%)
 Frame = -3

Query: 463 NAILFKFHFANKLYWKLNNILNTYIIVSSLENIPVYICIYTKPTNHSSMFTXKP 302
           NA LF+F   + + W L  IL    I  S  N P+YI    KP  H S     P
Sbjct: 359 NASLFEF---DAVPWGLEGILQH--IKQSYNNPPIYILENGKPMKHGSTLQDTP 407


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,066,022
Number of Sequences: 28952
Number of extensions: 230616
Number of successful extensions: 345
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)