Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30796
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   2e-09
SB_24591| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_24775| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.029
SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_18548| Best HMM Match : Peptidase_A17 (HMM E-Value=1.6e-18)         29   2.5  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_38994| Best HMM Match : Integrin_beta (HMM E-Value=0)               28   4.4  
SB_34061| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)              28   5.8  
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_36068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 32/89 (35%), Positives = 50/89 (56%)
 Frame = +3

Query: 258 LYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYVEQLAA 437
           ++D  GKRY+D       V+ GHCHP++  AL+DQ  +L  T+  + +  + E+ ++   
Sbjct: 1   MWDVTGKRYIDFLAAYSAVNQGHCHPRIVKALQDQAGILSLTSRAFYNDVLGEF-QEFVT 59

Query: 438 KLPGDLNVVYLVNSGSEANELATLLAKAY 524
           KL G  + V  VNSG E  E A  LA+ +
Sbjct: 60  KLCG-YDKVLPVNSGVEGGETACKLARKW 87


>SB_24591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 129 FVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKPVLLTQGHMQWLYD 266
           + P PY G S+ + +Q++  Y+ P++   YK P+ +     +W+ D
Sbjct: 40  YKPEPYKGMSFDKAKQIRQTYLNPALLAYYKDPIFIWAVITKWIQD 85


>SB_24775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 35.5 bits (78), Expect = 0.029
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +3

Query: 255 WLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQL 365
           ++ D D KRY+D  G    + +GH HP+V  A+++QL
Sbjct: 43  YVTDEDDKRYVDYVGSWGPMILGHSHPEVLDAVRNQL 79


>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
 Frame = +3

Query: 117 RRRHFVPRPYTGPSYQQVEQMKGVYMPPSI-------TNAYKKPVLLTQGHMQWLYDNDG 275
           RR   + RP    S+  +++ +G+ M  S+       +   K  V   +    ++ D DG
Sbjct: 105 RRALHISRPVLVASFN-IDEYEGIDMRTSVPGPKSQSSKGMKYFVDFEKSKGNYVVDADG 163

Query: 276 KRYLDLFGGIVTVSVGHCHPKVNAALKD 359
              LD++  I ++ +G+ HP +  A++D
Sbjct: 164 NVMLDVYQQIASIPLGYNHPALLKAMQD 191


>SB_18548| Best HMM Match : Peptidase_A17 (HMM E-Value=1.6e-18)
          Length = 550

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 474 SLNIPRSNPPGA*RLIVRRTHRFSDVCTGWSYATI 370
           SL+IPR  PPG  R++    H F+D      Y  +
Sbjct: 418 SLHIPRCFPPGFGRMVRTDIHHFADASQDNGYGAV 452


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +3

Query: 228  VLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPK 338
            VLLT G  Q L     KR  D    IV+V VG C+ K
Sbjct: 4068 VLLTDGQSQDLVFTAAKRLRDAGVTIVSVGVGCCYSK 4104


>SB_38994| Best HMM Match : Integrin_beta (HMM E-Value=0)
          Length = 467

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +3

Query: 297 GGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYVEQLAAKLPGDLNVVYLV 473
           GGIVT + G CH   N+ +  + D L + +    H K+ +   Q    + G++  +YLV
Sbjct: 166 GGIVTPNDGQCHLS-NSGVYTKSDELDYPSIAQLHEKLLQKQIQPIFAVTGNVTDLYLV 223


>SB_34061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 51  KWLIEEQNYASTSSERTARPKCRRRHFVPRPYTGPSYQQVEQM 179
           +W+ E+Q  A  S+   + P+C   + +  P  GP  Q +E M
Sbjct: 60  RWIDEKQ--AGNSAATVSCPQCNTDYIIMFPPLGPLLQAIENM 100


>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
          Length = 434

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +2

Query: 77  CFDIVRTYSTAKMPPTAFRAQTVHGTFVPTSRTNERSLHAAFNHERL*EAGASHP 241
           CF I  T+++   P     A T H      S T+    HA+  H  +  A  +HP
Sbjct: 11  CFCIFVTHASTTHPYIT-HASTTHPHIAHASTTHPYITHASTTHHYIVHASTTHP 64


>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +2

Query: 146 HGTFVPTSRTNERSLHAAFNHERL*EAGASHPGAHAVVIRQRRQEIPGSVRWNRHRLRGP 325
           HG + PT  T+   L+A+     +  AG+ HP  HAV     +  +P +  W    LR P
Sbjct: 495 HGMY-PTVPTSSALLNASA--VPVPGAGSPHPHYHAVQGANGQYSVPCNCTWQPQDLRRP 551

Query: 326 LS 331
           ++
Sbjct: 552 VA 553


>SB_36068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 243

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 99  TARPKCRRRHFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKK 224
           T  PK +R   VP P + P YQ+++ + G Y   ++ + Y++
Sbjct: 186 TRVPKAQRFIGVPEPKSSPGYQRLKALLG-YQKFNVLSGYQR 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,939,302
Number of Sequences: 59808
Number of extensions: 463243
Number of successful extensions: 1283
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)