Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30790
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_40103| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_5882| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_42680| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 28   7.5  
SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)                 27   9.9  
SB_42908| Best HMM Match : NADH_dehy_S2_C (HMM E-Value=3.5)            27   9.9  
SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)                27   9.9  
SB_21194| Best HMM Match : FA_hydroxylase (HMM E-Value=1.8)            27   9.9  
SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 646 SAAVLNALTRQHHKPFRI--PAAVLQWAARSQKDLKLEPLP 530
           +  +LN++  QH +PF +      L W++ S+++ K + LP
Sbjct: 7   TGCILNSILYQHKRPFNVCLTRKTLYWSSESKEETKPKNLP 47


>SB_40103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 68  NGALTGQVSPSSQNTNIIRHQSLWTFIRIRGTKSLQ 175
           +G  TG  +PS  +TNIIRH     +  +  T  ++
Sbjct: 57  SGITTGTATPSVNSTNIIRHYYWHRYAHVNSTNIIR 92


>SB_5882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 640 AVLNALTRQHHKPFRIPAAVLQWAARSQKDLKLEPLPGVVGPRVQE 503
           AVL AL+  HH+    P  V  W  +   D+   P+  V+     E
Sbjct: 7   AVLTALSDLHHRKAAGPDGVPNWLLKDYADILASPVTSVLNSSFAE 52


>SB_42680| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 700

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 86  QVSPSSQNTNIIRHQSLWT 142
           QVS SS  TN +RH+S+W+
Sbjct: 458 QVSKSSNFTNSLRHKSVWS 476


>SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2235

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 619  RQHHKPFRIPAAVLQWAARSQKDLKLEP 536
            +QH +P R P A +  AAR  +   LEP
Sbjct: 1830 KQHQEPARTPVAAVPAAARDARITSLEP 1857


>SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)
          Length = 200

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 406 QQLDSQCKQENIFSNWLEEKVDLPSIFENISEVPE 510
           ++ D Q K++N FS WLEE  D   I E   ++P+
Sbjct: 31  EKADRQTKKKNGFSLWLEENRD--QIEEENPDIPD 63


>SB_42908| Best HMM Match : NADH_dehy_S2_C (HMM E-Value=3.5)
          Length = 218

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 68  NGALTGQVSPSSQNTNIIRH 127
           +G  TG  +PS  +TNIIRH
Sbjct: 57  SGITTGTATPSVNSTNIIRH 76


>SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)
          Length = 406

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 406 QQLDSQCKQENIFSNWLEEKVDLPSIFENISEVPE 510
           ++ D Q K++N FS WLEE  D   I E   ++P+
Sbjct: 324 EKADRQTKKKNGFSLWLEENRD--QIEEENPDIPD 356


>SB_21194| Best HMM Match : FA_hydroxylase (HMM E-Value=1.8)
          Length = 252

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 68  NGALTGQVSPSSQNTNIIRH 127
           +G  TG  +PS  +TNIIRH
Sbjct: 22  SGITTGTATPSVNSTNIIRH 41



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 68  NGALTGQVSPSSQNTNIIRH 127
           +G  TG  +PS  +TNIIRH
Sbjct: 74  SGITTGTATPSVNSTNIIRH 93


>SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 42  THNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEGVMG 206
           T + K  A + PSQD        PT+  +   GL     +L+HYN+    E ++G
Sbjct: 34  TTSFKSRAIVIPSQD--TKTESGPTN--VRKQGLKDLLSQLSHYNSNIRQEALLG 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,111,462
Number of Sequences: 59808
Number of extensions: 367102
Number of successful extensions: 933
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)