Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30790
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77460.1 68414.m09020 C2 domain-containing protein / armadill...    33   0.16 
At1g21830.1 68414.m02731 expressed protein EST gb|T21171 comes f...    30   1.5  
At4g35870.1 68417.m05094 expressed protein                             29   2.6  
At3g30670.1 68416.m03887 hypothetical protein                          27   8.1  
At1g40125.1 68414.m04763 hypothetical protein member of hypothet...    27   8.1  

>At1g77460.1 68414.m09020 C2 domain-containing protein /
            armadillo/beta-catenin repeat family protein similar to
            CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
            profiles PF00514: Armadillo/beta-catenin-like repeat,
            PF00168: C2 domain
          Length = 2110

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +1

Query: 433  ENIFSNWLEEKVDLPSIFENISEVPERVDPQPPAAVLASSPFVTS 567
            E I ++W +  +D   IFE +S+V  + DPQPP  +  S+ FV S
Sbjct: 1596 EKISASWPKAVLDAEGIFE-LSKVILQEDPQPPLDLWESAAFVLS 1639


>At1g21830.1 68414.m02731 expressed protein EST gb|T21171 comes from
           this gene
          Length = 206

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
 Frame = +2

Query: 26  TSVCLHAQYKNACQNGALTGQVSPSSQNTNIIRHQSLWTFIRIRGTKSLQQ*VRV-RRSH 202
           T VC+     N   N     Q SP + NT+I+ H S  + +R R  K +     V +   
Sbjct: 111 TKVCVDNNNNNTT-NSTCKKQQSPITSNTSIVEHNSAKSSLRWR--KRIGHLFHVIKLKS 167

Query: 203 GLRPSICSLTMSAVCCSKLRISSMMIVICLKTFRALQRRSKS 328
           G   S C +  S V  +K+R    M+       R   R+SKS
Sbjct: 168 GSSTSSCHVAPSKVEGTKVRKQGWMV---RTLTRKKSRKSKS 206


>At4g35870.1 68417.m05094 expressed protein
          Length = 817

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 20/78 (25%), Positives = 36/78 (46%)
 Frame = +1

Query: 394 NDLLQQLDSQCKQENIFSNWLEEKVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQP 573
           ND+LQ +  Q ++  + +      ++ P + EN+ E P   D +P +  L+  P   + P
Sbjct: 599 NDMLQLVPEQNEEYALENQEPSSNLETPLLPENMFESPRFGDIEPMSQDLSEYPISRTSP 658

Query: 574 TEELLREFETVYGAVELT 627
             +   +F   Y A  LT
Sbjct: 659 IPKQKFDFAQYY-AFNLT 675


>At3g30670.1 68416.m03887 hypothetical protein
          Length = 133

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 481 IFENISEVPERVDPQPPAAVLASSPFVTSQP 573
           +F++ +  P+RVDP PP       P ++  P
Sbjct: 79  LFQHSTNQPQRVDPLPPQETAQQDPPLSPDP 109


>At1g40125.1 68414.m04763 hypothetical protein member of
           hypothetical protein common family
          Length = 168

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 481 IFENISEVPERVDPQPPAAVLASSPFVTSQP 573
           +F++ +  P+RVDP PP       P ++  P
Sbjct: 78  LFQHSTNQPQRVDPLPPQETAQQDPPLSPDP 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,202,960
Number of Sequences: 28952
Number of extensions: 257579
Number of successful extensions: 759
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)