Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30789
         (684 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    40   0.043
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    35   1.6  
UniRef50_Q5FFA1 Cluster: Similar to competence protein F; n=2; E...    33   4.9  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 40.3 bits (90), Expect = 0.043
 Identities = 16/18 (88%), Positives = 18/18 (100%)
 Frame = +3

Query: 39  RFVDELTAHLVLSGYWNP 92
           R+VDELTAHLVLSGYW+P
Sbjct: 158 RWVDELTAHLVLSGYWSP 175


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +2

Query: 224 WYLPVRTHKRSYHQ 265
           WYLP RTHKRSYH+
Sbjct: 572 WYLPARTHKRSYHR 585


>UniRef50_Q5FFA1 Cluster: Similar to competence protein F; n=2;
           Ehrlichia ruminantium|Rep: Similar to competence protein
           F - Ehrlichia ruminantium (strain Gardel)
          Length = 230

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -3

Query: 505 FDVSLPVST-AKNYTIKTATLFFKVFSSTPIKSSGPRARKNNYQQSWQGGSASSKYAHLS 329
           FD +L + T AK    K  +LF  V +  P+     R R+  Y Q+     A SKY ++ 
Sbjct: 90  FDNTLHIKTYAKWMYNKNPSLFNNVTTIIPVPIHKKRLRQRKYNQATLLARALSKYCNIP 149

Query: 328 CSLRVLIR 305
             + VL+R
Sbjct: 150 LEISVLVR 157


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 666,445,687
Number of Sequences: 1657284
Number of extensions: 12868790
Number of successful extensions: 24772
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24767
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)