Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30789
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64813.1 68418.m08152 GTP-binding protein-related contains we...    27   8.8  
At5g63290.1 68418.m07943 coproporphyrinogen oxidase-related low ...    27   8.8  

>At5g64813.1 68418.m08152 GTP-binding protein-related contains weak
           similarity to Ras-related protein Rab-27A (Rab-27)
           (GTP-binding protein Ram) (Swiss-Prot:P51159) [Homo
           sapiens]
          Length = 342

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -3

Query: 511 YRFDVSLPVSTAKNYTIKTATLFFKVFSSTPIKSSGPRARKNNYQQSWQGGSASSK 344
           Y+++ ++P   A+       TL+ +   STP   + PR   ++ Q++   GSA SK
Sbjct: 281 YKYNNTIPPLPAQRNLTPPPTLYPQQPVSTPDNYTIPRYSLSSVQETTNNGSARSK 336


>At5g63290.1 68418.m07943 coproporphyrinogen oxidase-related low
           similarity to coproporphyrinogen III oxidase from
           Geobacillus stearothermophilus [GI:2104798]; contains
           Pfam profile PF04055: radical SAM domain protein
          Length = 484

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 457 TATLFFKVFSSTPIKSSGPRARKN--NYQQSWQGGSASSKYAHL 332
           ++ LFF+ FS   ++ + P AR+N      +   G  +S Y HL
Sbjct: 20  SSKLFFRAFSKVVLQDTPPSARRNASTNLTTLHKGPPTSAYVHL 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,419,051
Number of Sequences: 28952
Number of extensions: 286720
Number of successful extensions: 577
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)