Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30788
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 312 4e-86
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 148 9e-37
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 142 6e-35
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 133 2e-32
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 119 4e-28
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 100 2e-22
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 93 3e-20
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 83 5e-17
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 81 2e-16
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 80 4e-16
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 76 5e-15
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 75 1e-14
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 73 3e-14
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 69 9e-13
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 68 1e-12
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 66 4e-12
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 66 5e-12
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 63 3e-11
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 54 2e-08
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 53 4e-08
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 39 8e-04
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 34 0.018
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch... 33 0.032
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 33 0.055
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 31 0.13
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 31 0.13
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 31 0.17
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 31 0.22
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 31 0.22
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 30 0.29
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 29 0.51
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 29 0.68
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 29 0.68
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 28 1.2
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.6
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 3.6
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 4.8
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 4.8
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 26 4.8
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 26 6.3
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 26 6.3
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 26 6.3
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 25 8.4
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 312 bits (765), Expect = 4e-86
Identities = 147/203 (72%), Positives = 171/203 (84%)
Frame = +1
Query: 121 EGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVV 300
E YY KI++ +L + +K+QNLRRL+AQRN LNA+VR+LR GSYVGEV+
Sbjct: 14 ENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVI 73
Query: 301 KPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSL 480
K M K KVLVKVHPEGK+VVD+ ++DI ++ N RVALRN+SY L KILPNKVDPLVSL
Sbjct: 74 KTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSL 133
Query: 481 MMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 660
MMVEK+PDSTYEMVGGL+KQIKEIKEVIELPVKHPELF++LGI QPKG+LLYGPPGTGKT
Sbjct: 134 MMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKT 193
Query: 661 LLARAVAHHTECTFIRVSGSKLV 729
LLARAVAHHT+C FIRVSGS+LV
Sbjct: 194 LLARAVAHHTDCKFIRVSGSELV 216
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 148 bits (358), Expect = 9e-37
Identities = 74/151 (49%), Positives = 103/151 (68%)
Frame = +1
Query: 277 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPN 456
G +GEV+K +D ++ +VK ++VV NVD + + RV+L + T+ +ILP
Sbjct: 53 GQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPR 112
Query: 457 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 636
+VDPLV M +E D ++ VGGL++QI+E++EVIELP+K+PELF +GI PKGVLLY
Sbjct: 113 EVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLY 172
Query: 637 GPPGTGKTLLARAVAHHTECTFIRVSGSKLV 729
GPPGTGKTLLARAVA F++V S +V
Sbjct: 173 GPPGTGKTLLARAVAASLGVNFLKVVSSAIV 203
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 142 bits (343), Expect = 6e-35
Identities = 69/140 (49%), Positives = 91/140 (65%)
Frame = +1
Query: 310 DKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMV 489
+K ++ + KFVV L + V D+ RV Y + LP K+DP V++M V
Sbjct: 111 EKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQV 170
Query: 490 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 669
E+ PD TY VGG +QI+ ++EV+ELP+ PE F LGI PKG++LYGPPGTGKTL A
Sbjct: 171 EEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCA 230
Query: 670 RAVAHHTECTFIRVSGSKLV 729
RAVA+ T+ TFIRV GS+LV
Sbjct: 231 RAVANRTDATFIRVIGSELV 250
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 133 bits (322), Expect = 2e-32
Identities = 71/194 (36%), Positives = 115/194 (59%)
Frame = +1
Query: 148 KIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 327
+I + L+ E QN RL+ Q + + G+ + E++ D ++
Sbjct: 74 RIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGT-LEEIID--DDHAIV 130
Query: 328 VKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDS 507
PE + V + VD + + C V L +++ ++ +L + DP++++M ++K P
Sbjct: 131 STAGPE--YYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTE 188
Query: 508 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 687
+Y +GGL+ QI+EIKE +ELP+ HPEL++ +GI PKGV+LYG PGTGKTLLA+AVA+
Sbjct: 189 SYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 248
Query: 688 TECTFIRVSGSKLV 729
T TF+RV GS+L+
Sbjct: 249 TSATFLRVVGSELI 262
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 119 bits (287), Expect = 4e-28
Identities = 59/148 (39%), Positives = 92/148 (62%)
Frame = +1
Query: 286 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 465
+G+ ++ +D+ +V +VV + +D + + VAL+ S L ILP + D
Sbjct: 58 IGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEAD 117
Query: 466 PLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 645
+S++ ++ PD +Y VGGLD Q +E++E +ELP+ +L+ +GI P+GVLLYGPP
Sbjct: 118 SSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPP 177
Query: 646 GTGKTLLARAVAHHTECTFIRVSGSKLV 729
GTGKT+L +AVA+ T FIRV GS+ V
Sbjct: 178 GTGKTMLVKAVANSTAANFIRVVGSEFV 205
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 100 bits (240), Expect = 2e-22
Identities = 50/138 (36%), Positives = 79/138 (57%)
Frame = +1
Query: 316 KKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEK 495
K ++K + L V+ ++ + + +SY + LP++ D V M V++
Sbjct: 119 KSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDE 178
Query: 496 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 675
P Y +GGL KQI+E+ E I LP++ + F LG+ PKG L++GPPGTGKTLLARA
Sbjct: 179 KPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARA 238
Query: 676 VAHHTECTFIRVSGSKLV 729
A + TF++++ +LV
Sbjct: 239 CAAQSNATFLKLAAPQLV 256
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 93.5 bits (222), Expect = 3e-20
Identities = 36/73 (49%), Positives = 59/73 (80%)
Frame = +1
Query: 511 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 690
Y+ +GG +Q+ +I+E++ELP++HP+LF ++GI P+G+L+YGPPGTGKTL+ARAVA+ T
Sbjct: 223 YDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANET 282
Query: 691 ECTFIRVSGSKLV 729
F ++G +++
Sbjct: 283 GAFFFLINGPEIM 295
Score = 86.6 bits (205), Expect = 3e-18
Identities = 50/149 (33%), Positives = 85/149 (57%)
Frame = +1
Query: 283 YVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKV 462
YVG + + + + ++ E ++DLD++ +V + V + N + L P+ +
Sbjct: 426 YVGSDLASLCSEAAMQQIR-EKMDMIDLDEDEIDAEVLDSLGVTMDNFRFALGSSNPSAL 484
Query: 463 DPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGP 642
V VE VP+ +E +GGL++ +E++E +++PV + E F G+ KGVL +GP
Sbjct: 485 RETV----VE-VPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGP 539
Query: 643 PGTGKTLLARAVAHHTECTFIRVSGSKLV 729
PGTGKTLLA+A+A+ FI V G +L+
Sbjct: 540 PGTGKTLLAKAIANECSANFISVKGPELL 568
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 82.6 bits (195), Expect = 5e-17
Identities = 35/74 (47%), Positives = 49/74 (66%)
Frame = +1
Query: 508 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 687
T+ +GGL QI +I++++ELP ++PELF I P+GVLLYGPPGTGKT++ RAVA
Sbjct: 277 TFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAVAAE 336
Query: 688 TECTFIRVSGSKLV 729
+ G +V
Sbjct: 337 ANAQVFTIDGPSVV 350
Score = 75.8 bits (178), Expect = 6e-15
Identities = 34/76 (44%), Positives = 49/76 (64%)
Frame = +1
Query: 499 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 678
P+ + +GG ++ +++KE +E P+ H E F LG+ PKGVLLYGPPG KT+ A+A+
Sbjct: 543 PNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTITAKAI 602
Query: 679 AHHTECTFIRVSGSKL 726
A T FI V G +L
Sbjct: 603 ATETGLNFIAVKGPEL 618
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 81.0 bits (191), Expect = 2e-16
Identities = 36/80 (45%), Positives = 52/80 (65%)
Frame = +1
Query: 490 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 669
E D + +GGLD I E+ E++ +P+KHPE++ GI P+GVLL+GPPG GKT+LA
Sbjct: 166 EPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLA 225
Query: 670 RAVAHHTECTFIRVSGSKLV 729
A+A+ FI +S +V
Sbjct: 226 NALANELGVPFISISAPSIV 245
Score = 78.6 bits (185), Expect = 8e-16
Identities = 38/91 (41%), Positives = 56/91 (61%)
Frame = +1
Query: 457 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 636
KV P VP ++ +G L E++ I P+K PEL+ ++GI+ P GVLL+
Sbjct: 473 KVQPSSKREGFATVPGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLW 532
Query: 637 GPPGTGKTLLARAVAHHTECTFIRVSGSKLV 729
GPPG GKTLLA+AVA+ ++ FI + G +L+
Sbjct: 533 GPPGCGKTLLAKAVANESKANFISIRGPELL 563
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 79.8 bits (188), Expect = 4e-16
Identities = 36/90 (40%), Positives = 64/90 (71%), Gaps = 3/90 (3%)
Frame = +1
Query: 454 NKVDPLV-SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALG--IAQPKG 624
N+ + +V S +++ D +++ +GG+D+ + ++ + + P+K+PE+FD G ++ PKG
Sbjct: 68 NEYEQIVASQLVLPSEIDVSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKG 127
Query: 625 VLLYGPPGTGKTLLARAVAHHTECTFIRVS 714
+LLYGPPG GKT+LA+A+A ++ TFI VS
Sbjct: 128 LLLYGPPGCGKTMLAKALAKQSQATFINVS 157
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 76.2 bits (179), Expect = 5e-15
Identities = 31/58 (53%), Positives = 45/58 (77%)
Frame = +1
Query: 508 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 681
++E VGGLD I ++KE++ LP+ +PE+F + P+GVL +GPPGTGKTL+ARA+A
Sbjct: 264 SFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALA 321
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 74.5 bits (175), Expect = 1e-14
Identities = 34/78 (43%), Positives = 52/78 (66%)
Frame = +1
Query: 496 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 675
VP ++ +GGL++ +++ ++LP++ PELF G+ GVLLYGPPGTGKTLLA+A
Sbjct: 649 VPKVNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTLLAKA 707
Query: 676 VAHHTECTFIRVSGSKLV 729
VA F+ + G +L+
Sbjct: 708 VATELSLEFVSIKGPELL 725
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 73.3 bits (172), Expect = 3e-14
Identities = 39/87 (44%), Positives = 55/87 (63%)
Frame = +1
Query: 469 LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPG 648
L S ++VEK P+ ++ + GL+ + +KE + LP+K P+LF G G+LLYGPPG
Sbjct: 115 LTSAILVEK-PNVRWDDIAGLENAKEALKETVLLPIKLPQLFSH-GRKPWSGILLYGPPG 172
Query: 649 TGKTLLARAVAHHTECTFIRVSGSKLV 729
TGK+ LA+AVA TF +S S LV
Sbjct: 173 TGKSYLAKAVATEAGSTFFSISSSDLV 199
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 68.5 bits (160), Expect = 9e-13
Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Frame = +1
Query: 520 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTEC 696
+ GLD +KE + P PELF G+ +P +G+LL+GPPGTGKT+LARAVA +
Sbjct: 381 IAGLDDAKNSLKEAVIYPFLRPELFQ--GLREPVQGMLLFGPPGTGKTMLARAVATEAKA 438
Query: 697 TFIRVSGSKL 726
TF +S S L
Sbjct: 439 TFFSISASSL 448
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 68.1 bits (159), Expect = 1e-12
Identities = 29/57 (50%), Positives = 43/57 (75%)
Frame = +1
Query: 511 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 681
+ +GGL+ I ++KE++ LP+ +PE+F L I P+GVL +GPPGTGKTL+AR +A
Sbjct: 371 FNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLMARVLA 427
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 66.5 bits (155), Expect = 4e-12
Identities = 31/70 (44%), Positives = 47/70 (67%)
Frame = +1
Query: 520 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 699
V G+D+ +EI E ++ +K+P+ ++ LG P+G +L GPPGTGKTLLA+A A
Sbjct: 298 VAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGEANVP 356
Query: 700 FIRVSGSKLV 729
F+ VSGS+ +
Sbjct: 357 FLSVSGSEFL 366
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 66.1 bits (154), Expect = 5e-12
Identities = 34/80 (42%), Positives = 51/80 (63%)
Frame = +1
Query: 484 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 663
M E+ + + V G+D+ +E++E+++ ++ P F LG P+GVLL GPPGTGKT+
Sbjct: 257 MEERAINVRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGPPGTGKTM 315
Query: 664 LARAVAHHTECTFIRVSGSK 723
LARAVA F +SGS+
Sbjct: 316 LARAVAGEANVPFFFMSGSQ 335
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 63.3 bits (147), Expect = 3e-11
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = +1
Query: 511 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHH 687
++ + GL+ +KE + P P+LF G+ +P +G+LL+GPPGTGKT+LARAVA
Sbjct: 458 WDDISGLEFAKHSLKEAVVYPFLRPDLFQ--GLREPARGMLLFGPPGTGKTMLARAVATE 515
Query: 688 TECTFIRVSGSKL 726
+ F +S S L
Sbjct: 516 SRSVFFSISASSL 528
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 54.0 bits (124), Expect = 2e-08
Identities = 23/70 (32%), Positives = 42/70 (60%)
Frame = +1
Query: 520 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 699
+ G+ + + ++++IE PVK+ ++ + P G+LL+G PG GKT LA A++
Sbjct: 608 IAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYLASAISSTFPVQ 667
Query: 700 FIRVSGSKLV 729
FI + G +L+
Sbjct: 668 FISIKGPELL 677
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 53.2 bits (122), Expect = 4e-08
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +1
Query: 520 VGGLDKQIKEI-KEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 678
+GGLD + I + + P + + LGI KG+LLYGPPGTGKTL+AR +
Sbjct: 271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLIARQI 324
Score = 29.1 bits (62), Expect = 0.68
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 625 VLLYGPPGTGKTLLARAVAHHTECTFIR-VSGSKLV 729
VLL GP +GKT LA +A +E F++ VS +V
Sbjct: 588 VLLSGPIASGKTALAATIALGSEFPFVKLVSAESMV 623
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 38.7 bits (86), Expect = 8e-04
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 529 LDKQIKE-IKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 681
L+ +K+ I + + +++ + +D GI +G LLYGPPG+GKT A+A
Sbjct: 212 LESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALA 263
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 34.3 bits (75), Expect = 0.018
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 625 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 720
++L+G GTGKT LAR +A T+ FI +S +
Sbjct: 123 MILWGSAGTGKTTLARLIAVTTKSRFIEISAT 154
>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 33.5 bits (73), Expect = 0.032
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +1
Query: 523 GGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP-GTGKTLLARAVAHHTECT 699
G L QI+E+ I P+K + DA + YG P G L V +HTE
Sbjct: 266 GSLRTQIEELAASINFPLKKLYVIDASRRSTHSNAFFYGLPWNKGIVLFDTLVKNHTEPE 325
Query: 700 FIRVSGSKL 726
I + G +L
Sbjct: 326 LIAILGHEL 334
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 32.7 bits (71), Expect = 0.055
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +1
Query: 529 LDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 708
LD+ +K+V + ++ + G Q K + L GPPG GKT + +++A F R
Sbjct: 542 LDRDHYGLKDVKDRVLELVAVGKLRGTMQGKIMCLVGPPGVGKTSVGKSIASALNREFFR 601
Query: 709 VS 714
S
Sbjct: 602 FS 603
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 31.5 bits (68), Expect = 0.13
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 502 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGI-AQPKGVLLYGPPGTGKTLLARAV 678
DS G + I +K++ K P L +L + PKG+ LYG G GKT L
Sbjct: 80 DSMPAEKGSILSWISPLKKMFSRK-KSPTLTSSLPVPGMPKGIYLYGDVGCGKTALMDLF 138
Query: 679 AHH 687
H+
Sbjct: 139 YHN 141
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +1
Query: 604 GIAQPKGVLLYGPPGTGKTLLARAVA 681
G+ K VLL GPPG GKT A VA
Sbjct: 405 GLGLYKAVLLSGPPGIGKTTAAHLVA 430
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 31.1 bits (67), Expect = 0.17
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 628 LLYGPPGTGKTLLARAVAHH 687
L+ GPPGTGKT+ + +V +H
Sbjct: 411 LIQGPPGTGKTVTSASVVYH 430
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 30.7 bits (66), Expect = 0.22
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 625 VLLYGPPGTGKTLLARAVAHHTE 693
+++ G PGTGKT LA VA TE
Sbjct: 11 IIICGTPGTGKTTLAEQVAETTE 33
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 30.7 bits (66), Expect = 0.22
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 619 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 714
K +LL G PG GKT L A+A T +R++
Sbjct: 1560 KPILLEGSPGVGKTSLITALARETGHQLVRIN 1591
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 625 VLLYGPPGTGKTLLARAVAHHTECTFIRVS 714
+L+ GP +GKT + VA T F+R++
Sbjct: 897 ILIQGPTSSGKTSMIEYVAKKTGHKFVRIN 926
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 30.3 bits (65), Expect = 0.29
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +1
Query: 619 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSKL 726
+ +L+ GPP TGKT +A +A ++ F+ +S S++
Sbjct: 66 RAILMAGPPSTGKTAIAMGMAQSLGSDTPFVTLSASEV 103
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 29.5 bits (63), Expect = 0.51
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +1
Query: 619 KGVLLYGPPGTGKTLLARAVA 681
KGVL G GTGKT LA A+A
Sbjct: 65 KGVLFAGGAGTGKTALALAIA 85
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 29.1 bits (62), Expect = 0.68
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = +1
Query: 466 PLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK----GVLL 633
P+ L EK E V L KQ+ E + L A G++ P L
Sbjct: 563 PVTRLKTTEKERLLNMEKV--LSKQVIGQNEAVTAVANAIRLSRA-GLSDPNQPIASFLF 619
Query: 634 YGPPGTGKTLLARAVA 681
GP GTGKTLL +A+A
Sbjct: 620 CGPSGTGKTLLTKALA 635
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 29.1 bits (62), Expect = 0.68
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 616 PKGVLLYGPPGTGK-TLLARAVAHHTECTFIRVSG 717
P V + GPPGTGK TL+ V +++ T +++G
Sbjct: 74 PVIVAVMGPPGTGKSTLIKSLVRRYSKYTISQITG 108
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 625 VLLYGPPGTGKTLLARAVA 681
+L YGPPGTGKT A A
Sbjct: 59 MLFYGPPGTGKTSTILACA 77
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 499 PDSTYEMVGGLDKQIKEIKEV 561
P +YE++ GLDKQ + K+V
Sbjct: 18 PKESYELLHGLDKQYQSTKDV 38
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 392 TSLISTFLSKSTTNLPSG*TFTRTFFLSIGLTT 294
TS+IS+ S S T++PS + +FF + G T+
Sbjct: 822 TSIISSIASSSYTSIPSISSIASSFFDASGFTS 854
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 26.2 bits (55), Expect = 4.8
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Frame = +1
Query: 370 KNVDINDVTANCRVA---LRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQ 540
+++D+ + N R L N + +L + K L L + +++ D+ +
Sbjct: 1202 ESIDLQEYAPNIRFTAQKLFNATTSLREFAALK--SLRHLPLSQRILDANVTRLPSNFTD 1259
Query: 541 IKEIKEVIELPVKHPELFDALGIAQPKG-VLLYGPPGTGKT 660
K+ K + V P+ + + G L+ GPPGTGKT
Sbjct: 1260 DKKQKIMKSYGVNEPQAYAIYASSVNDGFTLIQGPPGTGKT 1300
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1
Query: 628 LLYGPPGTGKT 660
L++GPPGTGKT
Sbjct: 229 LIHGPPGTGKT 239
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 625 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 720
++L G G GKT LA +AH + ++ S
Sbjct: 419 MMLTGLAGAGKTTLAHVIAHQAGYKVLEINAS 450
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 637 GPPGTGKTLLARAVAHHTECTFIRVS 714
G PGTGKT+L V H + +V+
Sbjct: 199 GAPGTGKTVLLHNVLDHVVSDYPKVN 224
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 154 EELQLIVAEKSQNLRRLQAQ 213
EEL+LI K ++ RRLQAQ
Sbjct: 275 EELELIAERKRESGRRLQAQ 294
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 444 NTTQQSRSSCVAHDGRESAGLYLRNGRWSRQTNQGD 551
N+T + SS A+ +S+G ++ NG+ + + G+
Sbjct: 233 NSTSKVMSSASANKPSKSSGFHINNGKSKEEKSHGE 268
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 619 KGVLLYGPPGTGK-TLLARAVAHH 687
K V+++GP G GK TLL R + H
Sbjct: 19 KPVVVFGPSGVGKSTLLKRLLKDH 42
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,184
Number of Sequences: 5004
Number of extensions: 54773
Number of successful extensions: 237
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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