Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30788
(730 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 320 4e-88
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 319 1e-87
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 145 3e-35
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 145 3e-35
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 144 4e-35
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 144 4e-35
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 142 3e-34
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 142 3e-34
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 122 2e-28
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 116 2e-26
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 116 2e-26
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 99 3e-21
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 97 8e-21
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 97 8e-21
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 78 7e-15
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 77 2e-14
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 76 2e-14
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 76 2e-14
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 76 3e-14
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 75 4e-14
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 75 4e-14
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 75 5e-14
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 75 6e-14
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 75 6e-14
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 74 8e-14
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 73 2e-13
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 73 3e-13
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 72 3e-13
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 72 5e-13
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 71 6e-13
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 71 8e-13
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 71 8e-13
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 71 8e-13
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 71 8e-13
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 70 1e-12
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 70 2e-12
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 70 2e-12
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 69 3e-12
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 69 3e-12
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 68 7e-12
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 68 7e-12
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 66 2e-11
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 65 4e-11
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 64 7e-11
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 64 1e-10
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 62 3e-10
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 62 3e-10
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 62 3e-10
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 62 4e-10
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 61 6e-10
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 60 1e-09
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 60 2e-09
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 59 3e-09
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 49 3e-06
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 48 6e-06
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 48 8e-06
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 48 8e-06
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 47 1e-05
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 47 1e-05
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 46 3e-05
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 45 4e-05
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 45 6e-05
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 44 8e-05
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 44 1e-04
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 42 3e-04
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 42 4e-04
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 41 7e-04
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 41 7e-04
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 41 0.001
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 40 0.001
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 40 0.002
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains... 39 0.003
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 39 0.003
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 39 0.004
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 38 0.005
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 38 0.005
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 38 0.005
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 38 0.007
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 38 0.009
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 37 0.012
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 37 0.012
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 37 0.012
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 37 0.012
At2g46620.1 68415.m05815 AAA-type ATPase family protein contains... 37 0.012
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 37 0.012
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 36 0.021
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p... 36 0.036
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 36 0.036
At1g08270.2 68414.m00912 expressed protein low similarity to SP|... 36 0.036
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 35 0.064
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 34 0.084
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 34 0.084
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 33 0.15
At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding ... 33 0.19
At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR... 33 0.19
At2g36380.1 68415.m04464 ABC transporter family protein related ... 33 0.26
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p... 32 0.34
At2g37280.1 68415.m04573 ABC transporter family protein similar ... 32 0.34
At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding ... 32 0.34
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ... 32 0.45
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 32 0.45
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 32 0.45
At1g66950.1 68414.m07612 ABC transporter family protein similar ... 32 0.45
At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding ... 31 0.78
At1g15520.1 68414.m01867 ABC transporter family protein similar ... 31 0.78
At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-... 30 1.4
At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP1... 30 1.4
At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR... 30 1.4
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains... 30 1.4
At4g15236.1 68417.m02335 ABC transporter family protein similar ... 30 1.8
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr... 30 1.8
At2g29940.1 68415.m03642 ABC transporter family protein similar ... 30 1.8
At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR... 30 1.8
At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR... 30 1.8
At1g60700.1 68414.m06833 forkhead-associated domain-containing p... 30 1.8
At1g15210.1 68414.m01818 ABC transporter family protein Similar ... 30 1.8
At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial (... 29 2.4
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff... 29 2.4
At4g15230.1 68417.m02333 ABC transporter family protein similar ... 29 2.4
At4g15215.1 68417.m02332 ABC transporter family protein similar ... 29 2.4
At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyri... 29 2.4
At3g16340.1 68416.m02066 ABC transporter family protein similar ... 29 2.4
At1g63750.1 68414.m07214 disease resistance protein (TIR-NBS-LRR... 29 2.4
At1g63160.1 68414.m07138 replication factor C 40 kDa, putative s... 29 2.4
At1g59870.1 68414.m06745 ABC transporter family protein similar ... 29 2.4
At1g08270.1 68414.m00913 expressed protein low similarity to SP|... 29 2.4
At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR... 29 3.2
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 29 3.2
At4g30490.1 68417.m04329 AFG1-like ATPase family protein contain... 29 3.2
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik... 29 3.2
At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR... 29 3.2
At1g73170.1 68414.m08466 expressed protein 29 3.2
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 29 3.2
At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR... 29 4.2
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 29 4.2
At3g49830.1 68416.m05448 DNA helicase-related similar to DNA hel... 29 4.2
At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic... 29 4.2
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 28 5.5
At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS... 28 5.5
At1g14460.1 68414.m01715 DNA polymerase-related weak similarity ... 28 5.5
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,... 28 5.5
At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR... 28 7.3
At4g38870.1 68417.m05504 F-box family protein contains Pfam prof... 28 7.3
At4g28070.1 68417.m04026 AFG1-like ATPase family protein contain... 28 7.3
At1g79050.1 68414.m09217 DNA repair protein recA identical to DN... 28 7.3
At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing... 27 9.6
At4g15233.1 68417.m02334 ABC transporter family protein similar ... 27 9.6
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR... 27 9.6
At3g29185.2 68416.m03659 expressed protein 27 9.6
At3g29185.1 68416.m03658 expressed protein 27 9.6
At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR... 27 9.6
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 320 bits (787), Expect = 4e-88
Identities = 150/205 (73%), Positives = 176/205 (85%)
Frame = +1
Query: 115 KGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGE 294
+GEG YY+ ++ELQ + EKS NL RL+AQRNELN++VRMLR GSYVGE
Sbjct: 28 QGEGLNKYYLQHLDELQRLQREKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGE 87
Query: 295 VVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLV 474
VVK M K KVLVKVHPEGK+VVD+DK++DI +T + RVALRN+SY LH +LP+KVDPLV
Sbjct: 88 VVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLV 147
Query: 475 SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTG 654
+LM VEKVPDSTY+M+GGLD+QIKEIKEVIELP+KHPELF++LGIAQPKGVLLYGPPGTG
Sbjct: 148 NLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTG 207
Query: 655 KTLLARAVAHHTECTFIRVSGSKLV 729
KTLLARAVAHHT+CTFIRVSGS+LV
Sbjct: 208 KTLLARAVAHHTDCTFIRVSGSELV 232
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 319 bits (784), Expect = 1e-87
Identities = 149/205 (72%), Positives = 176/205 (85%)
Frame = +1
Query: 115 KGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGE 294
+GEG + YY+ I ELQ + +K+ NL RL+AQRNELN++VRMLR GSYVGE
Sbjct: 28 QGEGLKQYYLQHIHELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGE 87
Query: 295 VVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLV 474
VVK M K KVLVKVHPEGK+VVD+DK++DI +T + RVALRN+SY LH +LP+KVDPLV
Sbjct: 88 VVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLV 147
Query: 475 SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTG 654
+LM VEKVPDSTY+M+GGLD+QIKEIKEVIELP+KHPELF++LGIAQPKGVLLYGPPGTG
Sbjct: 148 NLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTG 207
Query: 655 KTLLARAVAHHTECTFIRVSGSKLV 729
KTLLARAVAHHT+CTFIRVSGS+LV
Sbjct: 208 KTLLARAVAHHTDCTFIRVSGSELV 232
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 145 bits (351), Expect = 3e-35
Identities = 73/147 (49%), Positives = 96/147 (65%), Gaps = 1/147 (0%)
Frame = +1
Query: 292 EVVKP-MDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDP 468
+++ P + K ++ V KFVV L V D+ RV + Y + LP K+DP
Sbjct: 93 KIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDP 152
Query: 469 LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPG 648
V++M VE+ PD TY VGG +QI++++EV+ELP+ HPE F LGI PKGVL YGPPG
Sbjct: 153 SVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPG 212
Query: 649 TGKTLLARAVAHHTECTFIRVSGSKLV 729
TGKTLLARAVA+ T+ FIRV GS+LV
Sbjct: 213 TGKTLLARAVANRTDACFIRVIGSELV 239
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 145 bits (351), Expect = 3e-35
Identities = 76/192 (39%), Positives = 118/192 (61%)
Frame = +1
Query: 154 EELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVK 333
+EL+ V +NLR + + N+ ++ L+ G +GEV++P+D ++++VK
Sbjct: 26 KELESRVRTARENLRAAKKEFNKTEDDLKSLQSV-------GQIIGEVLRPLDNERLIVK 78
Query: 334 VHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTY 513
++VV VD +T+ RV L + T+ + LP +VDP+V M+ E + +Y
Sbjct: 79 ASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISY 138
Query: 514 EMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 693
VGGL QI+E++E IELP+ +PELF +GI PKGVLLYGPPGTGKTLLARA+A + +
Sbjct: 139 SAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID 198
Query: 694 CTFIRVSGSKLV 729
F++V S ++
Sbjct: 199 ANFLKVVSSAII 210
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 144 bits (350), Expect = 4e-35
Identities = 76/192 (39%), Positives = 118/192 (61%)
Frame = +1
Query: 154 EELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVK 333
+EL+ V +NLR + + N+ ++ L+ G +GEV++P+D ++++VK
Sbjct: 26 KELESRVRTARENLRGAKKEFNKTEDDLKSLQSV-------GQIIGEVLRPLDNERLIVK 78
Query: 334 VHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTY 513
++VV VD +T+ RV L + T+ + LP +VDP+V M+ E + +Y
Sbjct: 79 ASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISY 138
Query: 514 EMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 693
VGGL QI+E++E IELP+ +PELF +GI PKGVLLYGPPGTGKTLLARA+A + +
Sbjct: 139 SAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID 198
Query: 694 CTFIRVSGSKLV 729
F++V S ++
Sbjct: 199 ANFLKVVSSAII 210
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 144 bits (350), Expect = 4e-35
Identities = 71/147 (48%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Frame = +1
Query: 292 EVVKP-MDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDP 468
+++ P + K +V + GK+VV L D+ A RV + + Y + LP K+DP
Sbjct: 130 QIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDP 189
Query: 469 LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPG 648
V++M VE+ PD+TY +GG +QI++I+EV+ELP+ HPE F LGI PKGVL YGPPG
Sbjct: 190 SVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPG 249
Query: 649 TGKTLLARAVAHHTECTFIRVSGSKLV 729
+GKTL+ARAVA+ T FIRV GS+LV
Sbjct: 250 SGKTLVARAVANRTGACFIRVVGSELV 276
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 142 bits (343), Expect = 3e-34
Identities = 82/217 (37%), Positives = 130/217 (59%)
Frame = +1
Query: 79 MTLTTKMEVDTVKGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXX 258
+T +TK ++ +K E + Y + + E VA + + L+ + + E +KV LR
Sbjct: 55 VTPSTKCKLRLLKLERIKDYLLMEEE----FVANQ-ERLKPQEEKAEEDRSKVDDLRGTP 109
Query: 259 XXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTL 438
VG + + +D+ +V ++ V + VD + + C + + N+ ++
Sbjct: 110 MS-------VGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSV 162
Query: 439 HKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP 618
IL ++VDP+VS+M VEK P +Y +GGL+ QI+EIKE +ELP+ HPEL++ +GI P
Sbjct: 163 VGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPP 222
Query: 619 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSKLV 729
KGV+LYG PGTGKTLLA+AVA+ T TF+RV GS+L+
Sbjct: 223 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 259
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 142 bits (343), Expect = 3e-34
Identities = 82/217 (37%), Positives = 130/217 (59%)
Frame = +1
Query: 79 MTLTTKMEVDTVKGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXX 258
+T +TK ++ +K E + Y + + E VA + + L+ + + E +KV LR
Sbjct: 55 VTPSTKCKLRLLKLERIKDYLLMEEE----FVANQ-ERLKPQEEKAEEDRSKVDDLRGTP 109
Query: 259 XXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTL 438
VG + + +D+ +V ++ V + VD + + C + + N+ ++
Sbjct: 110 MS-------VGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSV 162
Query: 439 HKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP 618
IL ++VDP+VS+M VEK P +Y +GGL+ QI+EIKE +ELP+ HPEL++ +GI P
Sbjct: 163 VGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPP 222
Query: 619 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSKLV 729
KGV+LYG PGTGKTLLA+AVA+ T TF+RV GS+L+
Sbjct: 223 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 259
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 122 bits (295), Expect = 2e-28
Identities = 60/148 (40%), Positives = 91/148 (61%)
Frame = +1
Query: 286 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 465
+G+ ++ +D+ +V + V + ++ + + VAL S L +LP + D
Sbjct: 79 IGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEAD 138
Query: 466 PLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 645
+SL+ + PD +Y +GG D Q +EI+E +ELP+ H EL+ +GI P+GVLLYGPP
Sbjct: 139 SSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPP 198
Query: 646 GTGKTLLARAVAHHTECTFIRVSGSKLV 729
GTGKT+LA+AVA+HT FIRV GS+ V
Sbjct: 199 GTGKTMLAKAVANHTTAAFIRVVGSEFV 226
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 116 bits (278), Expect = 2e-26
Identities = 55/118 (46%), Positives = 77/118 (65%)
Frame = +1
Query: 376 VDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIK 555
VD + + V + +SY + LP++ D V M V++ P Y +GGL+KQI+E+
Sbjct: 125 VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELV 184
Query: 556 EVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSKLV 729
E I LP+ H E F+ LG+ PKGVLLYGPPGTGKTL+ARA A T TF++++G +LV
Sbjct: 185 EAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 116 bits (278), Expect = 2e-26
Identities = 56/118 (47%), Positives = 77/118 (65%)
Frame = +1
Query: 376 VDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIK 555
VD + + V + +SY + LP++ D V M V++ P Y +GGL+KQI+E+
Sbjct: 124 VDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELV 183
Query: 556 EVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSKLV 729
E I LP+ H E F+ LGI PKGVLLYGPPGTGKTL+ARA A T TF++++G +LV
Sbjct: 184 EAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 241
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 99.1 bits (236), Expect = 3e-21
Identities = 40/80 (50%), Positives = 64/80 (80%)
Frame = +1
Query: 490 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 669
E++ D Y+ VGG+ KQ+ +I+E++ELP++HP+LF ++G+ PKG+LLYGPPG+GKTL+A
Sbjct: 199 ERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 258
Query: 670 RAVAHHTECTFIRVSGSKLV 729
RAVA+ T F ++G +++
Sbjct: 259 RAVANETGAFFFCINGPEIM 278
Score = 92.7 bits (220), Expect = 2e-19
Identities = 49/126 (38%), Positives = 79/126 (62%), Gaps = 1/126 (0%)
Frame = +1
Query: 355 VVDL-DKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGL 531
V+DL D ++D + + +A+ NE + H L N +P V +VP+ ++ +GGL
Sbjct: 432 VIDLEDDSIDAEILNS---MAVTNEHF--HTALGNS-NPSALRETVVEVPNVSWNDIGGL 485
Query: 532 DKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 711
+ +E++E ++ PV+HPE F+ G++ KGVL YGPPG GKTLLA+A+A+ + FI V
Sbjct: 486 ENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV 545
Query: 712 SGSKLV 729
G +L+
Sbjct: 546 KGPELL 551
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 97.5 bits (232), Expect = 8e-21
Identities = 39/80 (48%), Positives = 64/80 (80%)
Frame = +1
Query: 490 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 669
E++ + Y+ VGG+ KQ+ +I+E++ELP++HP+LF ++G+ PKG+LLYGPPG+GKTL+A
Sbjct: 199 ERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 258
Query: 670 RAVAHHTECTFIRVSGSKLV 729
RAVA+ T F ++G +++
Sbjct: 259 RAVANETGAFFFCINGPEIM 278
Score = 94.7 bits (225), Expect = 6e-20
Identities = 50/126 (39%), Positives = 80/126 (63%), Gaps = 1/126 (0%)
Frame = +1
Query: 355 VVDL-DKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGL 531
V+DL D ++D + + +A+ NE + H L N +P V +VP+ ++E +GGL
Sbjct: 432 VIDLEDDSIDAEILNS---MAVSNEHF--HTALGNS-NPSALRETVVEVPNVSWEDIGGL 485
Query: 532 DKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 711
+ +E++E ++ PV+HPE F+ G++ KGVL YGPPG GKTLLA+A+A+ + FI V
Sbjct: 486 ENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV 545
Query: 712 SGSKLV 729
G +L+
Sbjct: 546 KGPELL 551
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 97.5 bits (232), Expect = 8e-21
Identities = 39/80 (48%), Positives = 64/80 (80%)
Frame = +1
Query: 490 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 669
E++ + Y+ VGG+ KQ+ +I+E++ELP++HP+LF ++G+ PKG+LLYGPPG+GKTL+A
Sbjct: 200 ERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 259
Query: 670 RAVAHHTECTFIRVSGSKLV 729
RAVA+ T F ++G +++
Sbjct: 260 RAVANETGAFFFCINGPEIM 279
Score = 90.6 bits (215), Expect = 9e-19
Identities = 48/125 (38%), Positives = 78/125 (62%)
Frame = +1
Query: 355 VVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLD 534
V+DLD +I+ N +A+ N+ + L N +P V +VP+ ++E +GGL+
Sbjct: 433 VIDLDDE-EIDAEILNS-MAVSNDHF--QTALGNS-NPSALRETVVEVPNVSWEDIGGLE 487
Query: 535 KQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 714
+E++E ++ PV+HPE F+ G++ KGVL YGPPG GKTLLA+A+A+ + FI +
Sbjct: 488 NVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 547
Query: 715 GSKLV 729
G +L+
Sbjct: 548 GPELL 552
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 77.8 bits (183), Expect = 7e-15
Identities = 38/85 (44%), Positives = 55/85 (64%)
Frame = +1
Query: 475 SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTG 654
S + KVP+ ++ VGGL+ I + ++LP+ H +LF + G+ + GVLLYGPPGTG
Sbjct: 645 SALGAPKVPNVKWDDVGGLEDVKTSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTG 703
Query: 655 KTLLARAVAHHTECTFIRVSGSKLV 729
KTLLA+AVA F+ V G +L+
Sbjct: 704 KTLLAKAVATECSLNFLSVKGPELI 728
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/74 (50%), Positives = 51/74 (68%)
Frame = +1
Query: 508 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 687
T+E V G+D+ ++ +E++E +K PE F ALG PKGVLL GPPGTGKTLLA+A+A
Sbjct: 221 TFEDVAGVDEAKQDFEEIVEF-LKTPEKFSALGAKIPKGVLLTGPPGTGKTLLAKAIAGE 279
Query: 688 TECTFIRVSGSKLV 729
F +SGS+ +
Sbjct: 280 AGVPFFSLSGSEFI 293
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 76.2 bits (179), Expect = 2e-14
Identities = 41/111 (36%), Positives = 70/111 (63%), Gaps = 7/111 (6%)
Frame = +1
Query: 415 LRNESYTLHKILPNKV--DPLVSLMMVEKVPDS----TYEMVGGLDKQIKEIKEVIELPV 576
++NE+ +L K L + V + ++ + +P S +++ +G L+ + +KE++ LP+
Sbjct: 924 IQNENKSLKKSLKDVVTENEFEKKLLSDVIPPSDIGVSFDDIGALENVKETLKELVMLPL 983
Query: 577 KHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSKL 726
+ PELFD + +P KG+LL+GPPGTGKT+LA+AVA FI +S S +
Sbjct: 984 QRPELFDKGQLTKPTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1034
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 76.2 bits (179), Expect = 2e-14
Identities = 34/90 (37%), Positives = 53/90 (58%)
Frame = +1
Query: 457 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 636
K+ P ++ +VP +E VGG ++ ++ E +E P KH + F +G P G+L++
Sbjct: 705 KIRPSAMREVILEVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMF 764
Query: 637 GPPGTGKTLLARAVAHHTECTFIRVSGSKL 726
GPPG KTL+ARAVA + F+ V G +L
Sbjct: 765 GPPGCSKTLMARAVASEAKLNFLAVKGPEL 794
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/70 (40%), Positives = 44/70 (62%)
Frame = +1
Query: 520 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 699
+GGL K+ ++++I+ L +LG+ KGVL++GPPGTGKT LAR A H+
Sbjct: 387 LGGLSKEYAILRDIIDSSSIKNSL-SSLGLRPTKGVLIHGPPGTGKTSLARTFARHSGVN 445
Query: 700 FIRVSGSKLV 729
F V+G +++
Sbjct: 446 FFSVNGPEII 455
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains Pfam
profile PF00004: ATPase, AAA family
Length = 1122
Score = 75.8 bits (178), Expect = 3e-14
Identities = 37/87 (42%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Frame = +1
Query: 469 LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPP 645
L+S +++ D T++ +G L+K +KE++ LP++ PELF + +P KG+LL+GPP
Sbjct: 805 LLSDVILPSDIDVTFDDIGALEKVKDILKELVMLPLQRPELFCKGELTKPCKGILLFGPP 864
Query: 646 GTGKTLLARAVAHHTECTFIRVSGSKL 726
GTGKT+LA+AVA + FI +S S +
Sbjct: 865 GTGKTMLAKAVAKEADANFINISMSSI 891
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 75.4 bits (177), Expect = 4e-14
Identities = 37/74 (50%), Positives = 50/74 (67%)
Frame = +1
Query: 508 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 687
T++ V G+D+ ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 225 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIAGE 283
Query: 688 TECTFIRVSGSKLV 729
F +SGS+ V
Sbjct: 284 AGVPFFSISGSEFV 297
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 75.4 bits (177), Expect = 4e-14
Identities = 37/74 (50%), Positives = 50/74 (67%)
Frame = +1
Query: 508 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 687
T++ V G+D+ ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 218 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGE 276
Query: 688 TECTFIRVSGSKLV 729
F +SGS+ V
Sbjct: 277 AGVPFFSISGSEFV 290
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 74.9 bits (176), Expect = 5e-14
Identities = 34/95 (35%), Positives = 60/95 (63%)
Frame = +1
Query: 442 KILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 621
KI + V P ++ + ++P T++ VGGL K++++ +E P+KH F +GI+ +
Sbjct: 262 KIAKSVVGPSINRGITVEIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMR 321
Query: 622 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSKL 726
G+LL+GPPG KT LA+A A+ + +F +S ++L
Sbjct: 322 GILLHGPPGCSKTTLAKAAANAAQASFFSLSCAEL 356
Score = 61.3 bits (142), Expect = 6e-10
Identities = 27/65 (41%), Positives = 42/65 (64%)
Frame = +1
Query: 520 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 699
+GG ++ ++ ++E+I P ++P LG+ P+G+LLYGPPGTGKT L RAV +
Sbjct: 24 IGGNERALQALRELIIFPFRYPLEARTLGLKWPRGLLLYGPPGTGKTSLVRAVVQECDAH 83
Query: 700 FIRVS 714
I +S
Sbjct: 84 LIVLS 88
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 74.5 bits (175), Expect = 6e-14
Identities = 34/77 (44%), Positives = 51/77 (66%)
Frame = +1
Query: 499 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 678
P+ +E + GL+ K +KE + +P+K+P F+ L + KG+LL+GPPGTGKT+LA+AV
Sbjct: 107 PNIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTMLAKAV 165
Query: 679 AHHTECTFIRVSGSKLV 729
A TF +S S +V
Sbjct: 166 ATECNTTFFNISASSVV 182
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 74.5 bits (175), Expect = 6e-14
Identities = 34/77 (44%), Positives = 51/77 (66%)
Frame = +1
Query: 499 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 678
P+ +E + GL+ K +KE + +P+K+P F+ L + KG+LL+GPPGTGKT+LA+AV
Sbjct: 98 PNIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTMLAKAV 156
Query: 679 AHHTECTFIRVSGSKLV 729
A TF +S S +V
Sbjct: 157 ATECNTTFFNISASSVV 173
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 74.1 bits (174), Expect = 8e-14
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Frame = +1
Query: 502 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAV 678
D + +GGL+ + + E++ LP+K PELF + P KGVLLYGPPGTGKT+LA+A+
Sbjct: 83 DVEFGSIGGLESIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAI 142
Query: 679 AHHTECTFIRVSGSKLV 729
A +E FI V S L+
Sbjct: 143 ARESEAVFINVKVSNLM 159
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 72.9 bits (171), Expect = 2e-13
Identities = 32/78 (41%), Positives = 48/78 (61%)
Frame = +1
Query: 496 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 675
VPD ++ VGGLD + I P+K P+++ A G+ G LLYGPPG GKTL+A+A
Sbjct: 522 VPDVKWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLIAKA 581
Query: 676 VAHHTECTFIRVSGSKLV 729
A+ F+ + G++L+
Sbjct: 582 AANEAGANFMHIKGAELL 599
Score = 66.9 bits (156), Expect = 1e-11
Identities = 28/81 (34%), Positives = 49/81 (60%)
Frame = +1
Query: 487 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 666
VE T++ GG+ K + E++ + P+ +PE F +G+ P G+L +GPPG GKT L
Sbjct: 224 VEGTKGPTFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKTKL 283
Query: 667 ARAVAHHTECTFIRVSGSKLV 729
A A+A+ F ++S ++++
Sbjct: 284 ANAIANEAGVPFYKISATEVI 304
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 72.5 bits (170), Expect = 3e-13
Identities = 34/73 (46%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = +1
Query: 511 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHH 687
+E +G L+ K + E++ LP++ PELF + +P KG+LL+GPPGTGKTLLA+A+A
Sbjct: 350 FEDIGALEDVKKALNELVILPMRRPELFARGNLLRPCKGILLFGPPGTGKTLLAKALATE 409
Query: 688 TECTFIRVSGSKL 726
FI ++GS L
Sbjct: 410 AGANFISITGSTL 422
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 72.1 bits (169), Expect = 3e-13
Identities = 32/70 (45%), Positives = 51/70 (72%)
Frame = +1
Query: 520 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 699
V G+D+ + E++E+++ +K+P+LFD +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 432 VAGIDEAVDELQELVKY-LKNPDLFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 490
Query: 700 FIRVSGSKLV 729
F +++GS+ V
Sbjct: 491 FYQMAGSEFV 500
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 71.7 bits (168), Expect = 5e-13
Identities = 33/73 (45%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = +1
Query: 511 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHH 687
++ +G L+ K + E++ LP++ PELF + +P KG+LL+GPPGTGKTLLA+A+A
Sbjct: 149 FDDIGALEHVKKTLNELVILPMRRPELFTRGNLLRPCKGILLFGPPGTGKTLLAKALATE 208
Query: 688 TECTFIRVSGSKL 726
FI ++GS L
Sbjct: 209 AGANFISITGSTL 221
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 71.3 bits (167), Expect = 6e-13
Identities = 30/60 (50%), Positives = 44/60 (73%)
Frame = +1
Query: 502 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 681
D ++ +GGL + I ++KE++ P+ +PE F + I P+GVLL GPPGTGKTL+ARA+A
Sbjct: 377 DINFDDIGGLSEYINDLKEMVFFPLLYPEFFASYSITPPRGVLLCGPPGTGKTLIARALA 436
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 70.9 bits (166), Expect = 8e-13
Identities = 31/74 (41%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Frame = +1
Query: 508 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAH 684
T+ +G LD+ + ++E++ LP++ P+LF G+ +P +G+LL+GPPGTGKT++A+A+A+
Sbjct: 412 TFADIGSLDETKESLQELVMLPLRRPDLFKG-GLLKPCRGILLFGPPGTGKTMMAKAIAN 470
Query: 685 HTECTFIRVSGSKL 726
+FI VS S +
Sbjct: 471 EAGASFINVSMSTI 484
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 70.9 bits (166), Expect = 8e-13
Identities = 35/95 (36%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Frame = +1
Query: 445 ILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-K 621
+ +K+ +++ +V++ P ++ V GL+ + + E++ LP K +LF G+ +P +
Sbjct: 193 VYDDKLVEMINTTIVDRSPSVKWDDVAGLNGAKQALLEMVILPAKRRDLFT--GLRRPAR 250
Query: 622 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSKL 726
G+LL+GPPG GKT+LA+AVA ++ TF VS S L
Sbjct: 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 70.9 bits (166), Expect = 8e-13
Identities = 32/74 (43%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Frame = +1
Query: 508 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAH 684
T++ +G LD+ + ++E++ LP++ P+LF G+ +P +G+LL+GPPGTGKT+LA+A+A
Sbjct: 519 TFKDIGALDEIKESLQELVMLPLRRPDLFTG-GLLKPCRGILLFGPPGTGKTMLAKAIAK 577
Query: 685 HTECTFIRVSGSKL 726
+FI VS S +
Sbjct: 578 EAGASFINVSMSTI 591
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 70.9 bits (166), Expect = 8e-13
Identities = 32/74 (43%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Frame = +1
Query: 508 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAH 684
T++ +G LD+ + ++E++ LP++ P+LF G+ +P +G+LL+GPPGTGKT+LA+A+A
Sbjct: 514 TFKDIGALDEIKESLQELVMLPLRRPDLFTG-GLLKPCRGILLFGPPGTGKTMLAKAIAK 572
Query: 685 HTECTFIRVSGSKL 726
+FI VS S +
Sbjct: 573 EAGASFINVSMSTI 586
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 70.1 bits (164), Expect = 1e-12
Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Frame = +1
Query: 502 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAV 678
D + +GGL+ + + E++ LP+K PELF + P KGVLLYGPPGTGKT+LA+A+
Sbjct: 80 DVEFGSIGGLETIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAI 139
Query: 679 AHHTECTFIRVSGSKLV 729
A + FI V S L+
Sbjct: 140 AKESGAVFINVRVSNLM 156
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 69.7 bits (163), Expect = 2e-12
Identities = 35/74 (47%), Positives = 50/74 (67%)
Frame = +1
Query: 508 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 687
T+ V G+D+ +E++E++E +++PE + LG P+GVLL G PGTGKTLLA+AVA
Sbjct: 323 TFADVAGVDEAKEELEEIVEF-LRNPEKYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 381
Query: 688 TECTFIRVSGSKLV 729
E FI S S+ V
Sbjct: 382 AEVPFISCSASEFV 395
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 69.7 bits (163), Expect = 2e-12
Identities = 39/111 (35%), Positives = 66/111 (59%), Gaps = 7/111 (6%)
Frame = +1
Query: 415 LRNESYTLHKILPNKV--DPLVSLMMVEKVPDS----TYEMVGGLDKQIKEIKEVIELPV 576
++NE+ + K L + V + ++ + +P S ++ +G L+ +KE++ LP+
Sbjct: 911 IQNENKSTKKSLKDVVTENEFEKKLLSDVIPPSDIGVSFSDIGALENVKDTLKELVMLPL 970
Query: 577 KHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSKL 726
+ PELF + +P KG+LL+GPPGTGKT+LA+AVA FI +S S +
Sbjct: 971 QRPELFGKGQLTKPTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1021
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 68.9 bits (161), Expect = 3e-12
Identities = 34/74 (45%), Positives = 51/74 (68%)
Frame = +1
Query: 508 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 687
T+ V G+D+ +E++E++E +K+P+ + LG P+GVLL G PGTGKTLLA+AVA
Sbjct: 327 TFADVAGVDEAKEELEEIVEF-LKNPDRYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 385
Query: 688 TECTFIRVSGSKLV 729
++ FI S S+ V
Sbjct: 386 SDVPFISCSASEFV 399
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 68.9 bits (161), Expect = 3e-12
Identities = 37/82 (45%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Frame = +1
Query: 490 EKVPDS--TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 663
++VP++ T+ V G D+ E++EV++ +K+P+ + ALG PKG LL GPPGTGKTL
Sbjct: 240 QEVPETGVTFGDVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTL 298
Query: 664 LARAVAHHTECTFIRVSGSKLV 729
LARAVA F + S+ V
Sbjct: 299 LARAVAGEAGVPFFSCAASEFV 320
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 67.7 bits (158), Expect = 7e-12
Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +1
Query: 484 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKT 660
+++ P ++ V GL + + ++E + LP+ PE F GI +P KGVL++GPPGTGKT
Sbjct: 229 VLDSTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTGKT 286
Query: 661 LLARAVAHHTECTFIRVSGSKL 726
LLA+AVA TF VS + L
Sbjct: 287 LLAKAVATECGTTFFNVSSATL 308
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 67.7 bits (158), Expect = 7e-12
Identities = 36/82 (43%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Frame = +1
Query: 490 EKVPDS--TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 663
++VP++ ++ V G D+ E++EV++ +K+P+ + ALG PKG LL GPPGTGKTL
Sbjct: 252 QEVPETGVSFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTL 310
Query: 664 LARAVAHHTECTFIRVSGSKLV 729
LARAVA F + S+ V
Sbjct: 311 LARAVAGEAGVPFFSCAASEFV 332
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 66.5 bits (155), Expect = 2e-11
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +1
Query: 484 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKT 660
+V + P+ + V GL+ + ++E + LPVK P+ F G +P + LLYGPPGTGK+
Sbjct: 122 IVREKPNIKWSDVAGLESAKQALQEAVILPVKFPQFFT--GKRRPWRAFLLYGPPGTGKS 179
Query: 661 LLARAVAHHTECTFIRVSGSKLV 729
LA+AVA + TF VS S LV
Sbjct: 180 YLAKAVATEADSTFFSVSSSDLV 202
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 65.3 bits (152), Expect = 4e-11
Identities = 32/70 (45%), Positives = 46/70 (65%)
Frame = +1
Query: 511 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 690
++ V G D+ +EI E + +K+P+ ++ LG PKG LL GPPGTGKTLLA+A A +
Sbjct: 321 FKDVAGCDEAKQEIMEFVHF-LKNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES 379
Query: 691 ECTFIRVSGS 720
F+ +SGS
Sbjct: 380 GVPFLSISGS 389
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 64.5 bits (150), Expect = 7e-11
Identities = 27/56 (48%), Positives = 42/56 (75%)
Frame = +1
Query: 511 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 678
++ V GL+ + +KEV+ +P+ +PE FD LG+ P+G+LL+G PGTGKTL+ RA+
Sbjct: 718 WDSVAGLEGVTQCMKEVVLIPLLYPEFFDNLGLTPPRGILLHGHPGTGKTLVVRAL 773
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 63.7 bits (148), Expect = 1e-10
Identities = 32/68 (47%), Positives = 44/68 (64%)
Frame = +1
Query: 520 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 699
V G+D+ E++E++ ++ P+ F LG PKGVLL GPPGTGKT+LARA+A
Sbjct: 229 VKGVDEAKAELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP 287
Query: 700 FIRVSGSK 723
F SGS+
Sbjct: 288 FFSCSGSE 295
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 62.5 bits (145), Expect = 3e-10
Identities = 31/74 (41%), Positives = 47/74 (63%)
Frame = +1
Query: 508 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 687
T++ G + +E++E++ + +K+ E F GI PKGVLL+GPPGTGKTLLA+A+A
Sbjct: 314 TFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGE 372
Query: 688 TECTFIRVSGSKLV 729
F +G+ V
Sbjct: 373 AGLPFFAANGTDFV 386
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 62.5 bits (145), Expect = 3e-10
Identities = 33/72 (45%), Positives = 46/72 (63%)
Frame = +1
Query: 508 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 687
T++ V G D +E++EV+E +K+P F LG PKG+LL G PGTGKTLLA+A+A
Sbjct: 360 TFKDVKGCDDAKQELEEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE 418
Query: 688 TECTFIRVSGSK 723
F +GS+
Sbjct: 419 AGVPFFYRAGSE 430
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/70 (42%), Positives = 46/70 (65%)
Frame = +1
Query: 511 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 690
++ V G ++ +EI E + +++P+ ++ LG PKG LL GPPGTGKTLLA+A A +
Sbjct: 326 FKDVAGCEEAKQEIMEFVHF-LQNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES 384
Query: 691 ECTFIRVSGS 720
F+ +SGS
Sbjct: 385 AVPFLSISGS 394
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 62.1 bits (144), Expect = 4e-10
Identities = 29/81 (35%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +1
Query: 487 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTL 663
+++ P+ ++ + GL+ K + E++ P+ P++F G P KG+LL+GPPGTGKT+
Sbjct: 1 MDRDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFK--GCRSPGKGLLLFGPPGTGKTM 58
Query: 664 LARAVAHHTECTFIRVSGSKL 726
+ +A+A + TF +S S L
Sbjct: 59 IGKAIAGEAKATFFYISASSL 79
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 61.3 bits (142), Expect = 6e-10
Identities = 32/81 (39%), Positives = 47/81 (58%)
Frame = +1
Query: 487 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 666
+E+ D + V GL K E++E+++ H E++ G+ P G+LL GPPG GKTLL
Sbjct: 401 LERGVDVKFTDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVKIPGGILLCGPPGVGKTLL 459
Query: 667 ARAVAHHTECTFIRVSGSKLV 729
A+AVA F +S S+ V
Sbjct: 460 AKAVAGEAGVNFFSISASQFV 480
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = +1
Query: 508 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAH 684
T++ +G L+ +KE++ LP + PELF + +P G+LL+GP GTGKT+LA+AVA
Sbjct: 733 TFDDIGALENVKDTLKELVMLPFQWPELFCKGQLTKPCNGILLFGPSGTGKTMLAKAVAT 792
Query: 685 HTECTFIRVSGSK 723
I +S S+
Sbjct: 793 EAGANLINMSMSR 805
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 59.7 bits (138), Expect = 2e-09
Identities = 34/79 (43%), Positives = 45/79 (56%)
Frame = +1
Query: 493 KVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 672
K P ++ V G+D E+ E++ ++ + LG P+GVLL GPPGTGKTLLAR
Sbjct: 327 KNPTVGFDDVEGVDSAKDELVEIVSC-LQGSINYKKLGARLPRGVLLVGPPGTGKTLLAR 385
Query: 673 AVAHHTECTFIRVSGSKLV 729
AVA F VS S+ V
Sbjct: 386 AVAGEAGVPFFSVSASEFV 404
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 59.3 bits (137), Expect = 3e-09
Identities = 32/73 (43%), Positives = 41/73 (56%)
Frame = +1
Query: 511 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 690
+E VGG+ IKE+IELP K P++F + VLLYGPPG GKT + A A
Sbjct: 843 WEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902
Query: 691 ECTFIRVSGSKLV 729
FI V G +L+
Sbjct: 903 SLRFISVKGPELL 915
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +1
Query: 592 FDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 693
F I P +L+YGPPG+GKT+LARA A + E
Sbjct: 585 FSKFKIPSPGHILIYGPPGSGKTILARAAAKYFE 618
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +1
Query: 520 VGGLDKQIKEI-KEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 678
+GGL + +I + V P + LGI KG+LL+GPPGTGKTL+AR +
Sbjct: 217 IGGLGAEFADIFRRAFASRVFPPHVTSRLGIKHVKGMLLFGPPGTGKTLMARQI 270
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 48.0 bits (109), Expect = 6e-06
Identities = 25/78 (32%), Positives = 40/78 (51%)
Frame = +1
Query: 493 KVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 672
K P + ++ +EI EV+ +++P+ F +G P+GVL+ G GTGKT LA
Sbjct: 417 KNPPIPLKNFASIESMREEINEVVAF-LQNPKAFQEMGARAPRGVLIVGERGTGKTSLAL 475
Query: 673 AVAHHTECTFIRVSGSKL 726
A+A + V +L
Sbjct: 476 AIAAEARVPVVNVEAQEL 493
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 47.6 bits (108), Expect = 8e-06
Identities = 22/61 (36%), Positives = 38/61 (62%)
Frame = +1
Query: 505 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 684
ST+E + D +++ E ++ ++ E + +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 216 STFETMAMEDDLKRDVIEDLDRFIRRKEFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMAN 275
Query: 685 H 687
+
Sbjct: 276 Y 276
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 47.6 bits (108), Expect = 8e-06
Identities = 22/61 (36%), Positives = 38/61 (62%)
Frame = +1
Query: 505 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 684
ST+E + D +++ E ++ ++ E + +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 216 STFETMAMEDDLKRDVIEDLDRFIRRKEFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMAN 275
Query: 685 H 687
+
Sbjct: 276 Y 276
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Frame = +1
Query: 505 STYEMVGGLDKQIK-EIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 681
ST++ + +D +K + E ++ VK + + +G A +G LLYGPPGTGK+ L A+A
Sbjct: 262 STFKTLA-MDSDVKTSVMEDLDKFVKRRDFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMA 320
Query: 682 HH 687
+H
Sbjct: 321 NH 322
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Frame = +1
Query: 490 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDAL--GIA------QPKGVLLYGPP 645
+ + + +++ + G D+Q +EI++ I + + PE++D + G +P+ VL GPP
Sbjct: 311 DSMDEISWDNIAGYDQQKREIEDTILMALHSPEVYDDIVRGTRSKFESNRPRAVLFEGPP 370
Query: 646 GTGKTLLARAVAH 684
GTGKT AR +A+
Sbjct: 371 GTGKTSCARVIAN 383
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Frame = +1
Query: 505 STYEMVGGLDKQIKE-IKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 681
ST+ + LD ++K+ + E ++ V+ + +G A +G LLYGPPGTGK+ L A+A
Sbjct: 210 STFRTLA-LDPEVKKNLVEDLDRFVQRKGFYGRVGKAWKRGYLLYGPPGTGKSSLIAAIA 268
Query: 682 HH 687
+H
Sbjct: 269 NH 270
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/61 (37%), Positives = 37/61 (60%)
Frame = +1
Query: 505 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 684
ST++ + K+I + +E +K E + +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 206 STFDTLAMDPNAKKKIIDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 265
Query: 685 H 687
+
Sbjct: 266 Y 266
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 44.8 bits (101), Expect = 6e-05
Identities = 24/61 (39%), Positives = 37/61 (60%)
Frame = +1
Query: 505 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 684
ST+E + K+I + +E +K E + +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 207 STFETLAMDPGAKKKIIDDMERFLKRREFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 266
Query: 685 H 687
+
Sbjct: 267 Y 267
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = +1
Query: 529 LDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 708
L + ++ + + + + +P + +A +GVLL GPPGTGKTL AR +A + F+
Sbjct: 497 LGGDVWDLLDELMIYMGNPMQYYEKDVAFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 556
Query: 709 VSGSK 723
SG++
Sbjct: 557 ASGAE 561
>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +1
Query: 577 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 687
K + F ++G A +G LLYGPPGTGK+ + A+A+H
Sbjct: 226 KGKDFFKSVGRAWKRGYLLYGPPGTGKSSMVAAIANH 262
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +1
Query: 505 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 684
ST++ + D + + E ++ V + + +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 208 STFDTMAMNDDLKRSMIEDLDRFVGRKDFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMAN 267
Query: 685 H 687
+
Sbjct: 268 Y 268
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/61 (29%), Positives = 36/61 (59%)
Frame = +1
Query: 505 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 684
ST++ + ++ + + ++ ++ + + +G +G LLYGPPGTGKT L A+A+
Sbjct: 208 STFDTMAMNEELKRSVMGDLDRFIRRKDFYKRVGKPWKRGYLLYGPPGTGKTSLVAAIAN 267
Query: 685 H 687
+
Sbjct: 268 Y 268
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/63 (31%), Positives = 37/63 (58%)
Frame = +1
Query: 505 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 684
+T++ + + + +EIK + K + + +G A +G LL+GPPGTGK+ + A+A+
Sbjct: 203 ATFDTLAMEENKKEEIKSDLIKFSKSKDYYKKIGKAWKRGYLLFGPPGTGKSTMIAAMAN 262
Query: 685 HTE 693
E
Sbjct: 263 FLE 265
>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +1
Query: 586 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 684
E +D +G A +G LLYGPPGTGK+ + A+A+
Sbjct: 226 EYYDRIGKAWKRGYLLYGPPGTGKSTMIAAMAN 258
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1
Query: 505 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 684
ST+ + K + E ++ +K + + +G A + LYGPPGTGK+ L A+A+
Sbjct: 183 STFHTMAMTPKLKSSVMEDLDRFIKRKDYYKRVGKAWKRSYFLYGPPGTGKSSLVAAMAN 242
Query: 685 H 687
+
Sbjct: 243 Y 243
>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
similarity to mitochondrial ATPase (AAA family) Bcs1p,
Saccharomyces cerevisiae, Swiss Prot:P32839
Length = 248
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +1
Query: 586 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 684
+ F +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 21 DFFKTVGRAWKRGYLLYGPPGTGKSSLVAAIAN 53
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 586 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 687
E + +G A +G LL+GPPGTGK+ + A+A+H
Sbjct: 226 EYYKKIGKAWKRGYLLHGPPGTGKSTMIAAMANH 259
>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 512
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +1
Query: 505 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 684
ST++ + ++ K I E + + G A +G LLYGPPGTGK+ L A+A+
Sbjct: 201 STFDTLAMDPEKKKRIMEDLREFANGQGFYQKTGRAWKRGYLLYGPPGTGKSSLIAAMAN 260
Query: 685 H 687
+
Sbjct: 261 Y 261
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +1
Query: 505 STYEMVG-GLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 681
+++E +G LDK+ +EIK+ + K + + + +G LL+GPPGTGK+ + A+A
Sbjct: 191 ASFETLGMDLDKK-EEIKKDLIKFTKGKDYYRKVAKPWKRGYLLFGPPGTGKSTMISAIA 249
Query: 682 HHTE 693
+ E
Sbjct: 250 NFLE 253
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +1
Query: 544 KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 684
K++K+V L + L A +L YGPPGTGKT A A+AH
Sbjct: 18 KQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAH 64
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/61 (31%), Positives = 36/61 (59%)
Frame = +1
Query: 505 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 684
ST+E + ++ ++I + ++ + + G A +G LLYGPPGTGK+ + A+A+
Sbjct: 200 STFETLAMDPRKKQQIMDDLKDFAEGQVFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMAN 259
Query: 685 H 687
+
Sbjct: 260 Y 260
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = +1
Query: 505 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 684
+T++ + K+ +EIK + + + +G A +G LL+GPPGTGK+ + A+A+
Sbjct: 206 ATFDTLAMEYKKKEEIKNDLIKFSNSKDYYKKIGKAWKRGYLLFGPPGTGKSTMIAAMAN 265
Query: 685 HTE 693
E
Sbjct: 266 LLE 268
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +1
Query: 586 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 684
E + +G A +G LLYGPPGTGK+ + A+A+
Sbjct: 231 EYYKKIGKAWKRGYLLYGPPGTGKSTMISAMAN 263
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/61 (31%), Positives = 36/61 (59%)
Frame = +1
Query: 505 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 684
ST++ + + ++I E ++ + ++ G A +G LLYGPPGTGK+ + A+A+
Sbjct: 200 STFDTLAMDPVKKQQIMEDLKDFAECQSFYERTGRAWKRGYLLYGPPGTGKSSMIAAMAN 259
Query: 685 H 687
+
Sbjct: 260 Y 260
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +1
Query: 505 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 684
+T+E + K+ ++I + + + +G A +G LLYGPPGTGK+ + A+A+
Sbjct: 199 ATFETLAMDPKKKEQILNDLAAFNNGKDYYKKIGKAWKRGYLLYGPPGTGKSTMIAAMAN 258
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 37.1 bits (82), Expect = 0.012
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 619 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 717
+ +L YGPPGTGKT+ AR +A + + ++G
Sbjct: 399 RNILFYGPPGTGKTMAARELARRSGLDYALMTG 431
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 37.1 bits (82), Expect = 0.012
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +1
Query: 619 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 717
+ ++ YGPPGTGKT++AR +A + + ++G
Sbjct: 371 RNMMFYGPPGTGKTMVAREIARKSGLDYAMMTG 403
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +1
Query: 505 STYEMVG-GLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 681
+T+E + L+K+ K++I+ K + + +G +G LL+GPPGTGK+ + A+A
Sbjct: 202 ATFETLAMDLEKKEGMKKDLIKF-TKGKDYYRKVGKPWKRGYLLFGPPGTGKSTMISAMA 260
Query: 682 HHTE 693
+ E
Sbjct: 261 NFLE 264
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +1
Query: 505 STYEMVGGLDKQIKE-IKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 681
+T+E + +D + KE IK+ + K + + +G +G LL+GPPGTGK+ + A+A
Sbjct: 206 ATFETLA-MDPEKKEGIKKDLIKFSKGKDYYKKVGKPWKRGYLLFGPPGTGKSTMIAAIA 264
Query: 682 H 684
+
Sbjct: 265 N 265
>At2g46620.1 68415.m05815 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 491
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1
Query: 547 EIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSKL 726
++K +E +K + ++ LG + LLYGP GTGK+ A+A+ + + SK+
Sbjct: 208 KVKSDLESFLKGKQYYNRLGRVWKRSYLLYGPSGTGKSSFVAAMANFLDYDVYDIDLSKV 267
Query: 727 V 729
V
Sbjct: 268 V 268
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 37.1 bits (82), Expect = 0.012
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +1
Query: 619 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 717
+ ++ YGPPGTGKT++AR +A + + ++G
Sbjct: 386 RNMMFYGPPGTGKTMVAREIARKSGLDYAMMTG 418
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 36.3 bits (80), Expect = 0.021
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +1
Query: 619 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 717
+ +LL+GPPGTGKT+ AR +A + + ++G
Sbjct: 398 RNILLHGPPGTGKTMAARELARKSGLDYALMTG 430
>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 924
Score = 35.5 bits (78), Expect = 0.036
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 604 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 714
G +Q K + L GPPG GKT + R++A + F R S
Sbjct: 436 GTSQGKIICLSGPPGVGKTSIGRSIARALDRKFFRFS 472
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 35.5 bits (78), Expect = 0.036
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +1
Query: 625 VLLYGPPGTGKTLLARAVAH 684
+L YGPPGTGKT A A+AH
Sbjct: 33 MLFYGPPGTGKTTTALAIAH 52
>At1g08270.2 68414.m00912 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 132
Score = 35.5 bits (78), Expect = 0.036
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 484 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGV 627
++ + P+ + +V GL+ + +KE + LPV P+ F A I P+ V
Sbjct: 83 IIREKPNVKWTVVAGLESAKQALKEAVILPVNFPQFFTARAIYDPRDV 130
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 34.7 bits (76), Expect = 0.064
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 604 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 714
G +Q K + L GPPG GKT + R++A F R S
Sbjct: 453 GTSQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFS 489
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
to pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 34.3 bits (75), Expect = 0.084
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +1
Query: 589 LFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 717
L D GI +P + LL GPPG+GK+ L +A++ TE T +R +G
Sbjct: 162 LNDVSGIIKPGRLTLLLGPPGSGKSTLLKALSGKTE-TGLRSTG 204
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 34.3 bits (75), Expect = 0.084
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +1
Query: 541 IKEIKEVIELPVKHPELFD--ALGIAQPKGVLLYGPPGTGKTLLARAVA 681
+ E E+ + + F+ +L ++Q + VLLYGP G+GK+ L R +A
Sbjct: 326 VNSFSEPFEIHSRVKKSFEMVSLAVSQKRPVLLYGPSGSGKSALIRKLA 374
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 571 PVKHPELFDALGIAQ-PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSK 723
P H + L Q K +LL G PG GKT L A+ ++ +R++ S+
Sbjct: 1729 PTTHRNVLRVLRAMQLSKPILLEGSPGVGKTSLILALGKYSGHKVVRINLSE 1780
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +1
Query: 625 VLLYGPPGTGKTLLARAVA 681
+LL+GPPGTGKT L +A+A
Sbjct: 205 ILLHGPPGTGKTSLCKALA 223
>At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding
subunit ClpX1 (CLPX) identical to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 579
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 613 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSKL 726
+ +LL GP G+GKTLLA+ +A F+ + L
Sbjct: 222 EKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTL 259
>At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1226
Score = 33.1 bits (72), Expect = 0.19
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +1
Query: 526 GLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 705
GL ++++E+KE ++L + + LG+ G PG GKT LAR + C F+
Sbjct: 211 GLKQRLEELKEKLDLDCEETRI---LGVV--------GMPGIGKTTLAREIYETLRCKFL 259
Query: 706 R 708
R
Sbjct: 260 R 260
>At2g36380.1 68415.m04464 ABC transporter family protein related to
multi drug resistance proteins and P-glycoproteins
Length = 1453
Score = 32.7 bits (71), Expect = 0.26
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +1
Query: 505 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGV-LLYGPPGTGKTLLARAVA 681
+T E + GL + K IE+ L D GI +P + LL GPP +GKT L +A+A
Sbjct: 167 NTIESILGLFHLLPSKKRKIEI------LKDISGIIKPSRMTLLLGPPSSGKTTLLQALA 220
Query: 682 HHTECTFIRVSG 717
+ T +++SG
Sbjct: 221 GKLDDT-LQMSG 231
>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 942
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 604 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 714
G +Q K + L GP G GKT + R++A + F R S
Sbjct: 445 GTSQGKIICLSGPTGVGKTSIGRSIARALDRKFFRFS 481
>At2g37280.1 68415.m04573 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1413
Score = 32.3 bits (70), Expect = 0.34
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 589 LFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTE 693
L D GI P + LL GPPG GKT L +A++ + E
Sbjct: 155 LTDVSGIISPGRLTLLLGPPGCGKTTLLKALSGNLE 190
>At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 656
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 625 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSKL 726
VLL GP G+GKTLLA+ +A F+ + L
Sbjct: 311 VLLMGPTGSGKTLLAKTLARLVNVPFVIADATTL 344
>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1
RNA helicase pNORF1 [Homo sapiens] GI:1885356
Length = 1254
Score = 31.9 bits (69), Expect = 0.45
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 628 LLYGPPGTGKTLLARAVAHH 687
L+ GPPGTGKT+ + A+ +H
Sbjct: 507 LIQGPPGTGKTVTSAAIVYH 526
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +1
Query: 619 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSKL 726
K +LL GPPGTGKT LA ++ ++ F + GS++
Sbjct: 67 KALLLAGPPGTGKTALALGISQELGSKVPFCPMVGSEV 104
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 31.9 bits (69), Expect = 0.45
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +1
Query: 625 VLLYGPPGTGKTLLARAVA 681
+LLYGPPGTGKT AVA
Sbjct: 75 LLLYGPPGTGKTSTILAVA 93
>At1g66950.1 68414.m07612 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1454
Score = 31.9 bits (69), Expect = 0.45
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +1
Query: 589 LFDALGIAQPKGV-LLYGPPGTGKTLLARAVAHHTECTFIRVSG 717
L D GI +P + LL GPP +GKT L +A+A + T +++SG
Sbjct: 191 LKDISGIVKPSRMTLLLGPPSSGKTTLLQALAGKLDDT-LQMSG 233
>At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]; non-consensus splice donor GC at exon 4;
non-consensus splice donor AA at exon 7
Length = 606
Score = 31.1 bits (67), Expect = 0.78
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 625 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSKL 726
VLL GP G+GKTLLA+ +A F + L
Sbjct: 265 VLLLGPTGSGKTLLAKTLARIVNVPFAIADATSL 298
>At1g15520.1 68414.m01867 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1423
Score = 31.1 bits (67), Expect = 0.78
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 532 DKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVA 681
DK + + V K L D GI +P + LL GPP +GKT L A+A
Sbjct: 151 DKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKTTLLLALA 201
>At5g67630.1 68418.m08527 DNA helicase, putative similar to
RuvB-like DNA helicase reptin [Danio rerio] GI:27733814,
reptin [Drosophila melanogaster] GI:7243682
Length = 469
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 619 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSKL 726
+ +L+ G PGTGKT +A +A E F ++GS++
Sbjct: 67 RAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEI 104
>At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP101,
putative similar to heat shock protein 101 GI:6715468
GB:AAF26423 from [Arabidopsis thaliana]
Length = 623
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +1
Query: 502 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIA---QPKGVLLY-GPPGTGKTLLA 669
D +E V G D+ +K + I L +G+ QP G L+ GP G GKT LA
Sbjct: 530 DKLHERVVGQDEAVKAVAAAI--------LRSRVGLGRPQQPSGSFLFLGPTGVGKTELA 581
Query: 670 RAVA 681
+A+A
Sbjct: 582 KALA 585
>At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1109
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = +1
Query: 499 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 678
P S ++ + G++ +KE++ +++ FD G+ K V ++GP G GKT +ARA+
Sbjct: 178 PSSDFDGMVGIEAHLKEMEVLLD--------FDYDGV---KIVGIFGPAGIGKTTIARAL 226
>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 954
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 604 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 720
G + K +LL G PG GKT LA A H + ++ S
Sbjct: 341 GPPEQKILLLCGAPGLGKTTLAHIAAKHCGYRVVEINAS 379
>At4g15236.1 68417.m02335 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1388
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 604 GIAQPKGV-LLYGPPGTGKTLLARAVA 681
GI +PK + LL GPPG GKT L A++
Sbjct: 157 GIIRPKRMTLLLGPPGCGKTTLLLALS 183
>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
profile: ATPase family PF00004
Length = 440
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +1
Query: 505 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 684
S++E + + + + + I+L + + + +G + LL+G PG GKT L A+A
Sbjct: 162 SSFETIVMKEDLKRRLIDDIDLFISKEDFYKRVGRHWMRYYLLHGLPGAGKTSLVAAIAK 221
Query: 685 H 687
+
Sbjct: 222 Y 222
>At2g29940.1 68415.m03642 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1426
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 589 LFDALGIAQP-KGVLLYGPPGTGKTLLARAVA 681
L D GI +P + LL GPPG+GK+ L A+A
Sbjct: 176 LKDISGIIKPGRMTLLLGPPGSGKSTLLLALA 207
>At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1195
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = +1
Query: 499 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 678
P++ E+VG L +++KE+KE ++L K + LG+ PG GKT L + +
Sbjct: 214 PENQIELVG-LSQRLKELKEKLDLSRKETRIVGVLGM-----------PGIGKTTLVKRL 261
Query: 679 AHHTECTFIR 708
+ F R
Sbjct: 262 YDEWKHNFQR 271
>At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1017
Score = 29.9 bits (64), Expect = 1.8
Identities = 24/86 (27%), Positives = 43/86 (50%)
Frame = +1
Query: 421 NESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDA 600
NE+ + KI + +D L P ++ + G++ ++EIK +++L D
Sbjct: 160 NEAIMIEKIARDVLDKL------NATPSRDFDGMVGIEAHLREIKSLLDL--------DN 205
Query: 601 LGIAQPKGVLLYGPPGTGKTLLARAV 678
+ + K V + GP G GKT +ARA+
Sbjct: 206 VEV---KIVAIAGPAGIGKTTIARAL 228
>At1g60700.1 68414.m06833 forkhead-associated domain-containing
protein / FHA domain-containing protein contains
similarity to nucleolar protein GI:2384719 from [Mus
musculus]
Length = 525
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 361 DLDKNVDINDVTANCRVALRNES-YTLHKILPNKVDPL 471
DLD N DI D + R LR ES + ++ N DPL
Sbjct: 64 DLDNNADIGDGDEDIRNCLRPESDFWFKNLMDNPYDPL 101
>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
gb|Z70524 GI:1514643 PDR5-like ABC transporter from
Spirodela polyrrhiza and is a member of the PF|00005 ABC
transporter family. ESTs gb|N97039 and gb|T43169 come
from this gene
Length = 1442
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 589 LFDALGIAQPKGV-LLYGPPGTGKTLLARAVA 681
L D GI +P + LL GPP +GKT L A+A
Sbjct: 185 LKDVSGIVKPSRMTLLLGPPSSGKTTLLLALA 216
>At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial
(LON) identical to Lon protease homolog 1 mitochondrial
precursor SP:O64948 from [Arabidopsis thaliana]
Length = 888
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 637 GPPGTGKTLLARAVAHHTECTFIRVS 714
GPPG GKT LA ++A F+R+S
Sbjct: 408 GPPGVGKTSLASSIAAALGRKFVRLS 433
>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 818
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 601 LGIAQPKGVLLYGPPGTGKT 660
+G+++ VL+ GPPGTGKT
Sbjct: 268 VGLSRKSFVLIQGPPGTGKT 287
>At4g15230.1 68417.m02333 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1326
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 604 GIAQP-KGVLLYGPPGTGKTLLARAVA 681
GI +P + LL GPPG GKT L +A++
Sbjct: 162 GIVRPGRMTLLLGPPGCGKTTLLQALS 188
>At4g15215.1 68417.m02332 ABC transporter family protein similar to
PDR5-like ABC transporter [Spirodela polyrhiza]
GI:1514643; contains Pfam profile PF00005: ABC
transporter
Length = 1390
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 604 GIAQP-KGVLLYGPPGTGKTLLARAVA 681
GI +P + LL GPPG GKT L +A++
Sbjct: 159 GIVRPGRMTLLLGPPGCGKTTLLQALS 185
>At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyrin
repeat family protein contains Pfam profiles: PF00023
ankyrin repeat, PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 481
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +1
Query: 487 VEKVPDSTYEMVG--GLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 660
+E + D +VG L Q+++ + + L + L +G +P + G PGTGKT
Sbjct: 200 MELLEDELSNIVGLSELKTQLRKWAKGMLLDERRRALGLNIGTRRPPHMAFLGNPGTGKT 259
Query: 661 LLARAV 678
++AR +
Sbjct: 260 MVARVL 265
>At3g16340.1 68416.m02066 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]; contains Pfam profile: PF00005 ABC
transporter
Length = 1416
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 589 LFDALGIAQPKGV-LLYGPPGTGKTLLARAVA 681
L D GI +P + LL GPP +GKT L A+A
Sbjct: 163 LRDVSGIIKPSRMTLLLGPPSSGKTTLLLALA 194
>At1g63750.1 68414.m07214 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1131
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +1
Query: 499 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 678
P +E + GL+ +K+I+ ++ L K L +GI+ GP G GK+ +ARA+
Sbjct: 184 PSKDFEDMMGLEAHLKKIQSLLRLDYKDEALI--IGIS--------GPAGIGKSTIARAL 233
>At1g63160.1 68414.m07138 replication factor C 40 kDa, putative
similar to SWISS-PROT:Q9WUK4 activator 1 40 kDa subunit
(Replication factor C 40 kDa subunit, A1 40 kDa subunit,
RF-C 40 kDa subunit, RFC40) [Mus musculus]
Length = 333
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 625 VLLYGPPGTGKTLLARAVAH 684
++L GPPGTGKT A+AH
Sbjct: 51 LILSGPPGTGKTTSILALAH 70
>At1g59870.1 68414.m06745 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1469
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 589 LFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 717
L D G+ +P + LL GPP +GKT L A+A + + ++VSG
Sbjct: 187 LKDISGVIKPGRMTLLLGPPSSGKTTLLLALAGKLDKS-LQVSG 229
>At1g08270.1 68414.m00913 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 126
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 484 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF 594
++ + P+ + +V GL+ + +KE + LPV P+ F
Sbjct: 83 IIREKPNVKWTVVAGLESAKQALKEAVILPVNFPQFF 119
>At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1127
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 631 LYGPPGTGKTLLARAVAHHTECTF 702
++GP G GKT +ARA+ C F
Sbjct: 213 IWGPSGIGKTTIARALFSRLSCQF 236
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/82 (23%), Positives = 40/82 (48%)
Frame = +1
Query: 457 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 636
K+ +S +++ P ++ + G+ ++++K ++ L + +GI +
Sbjct: 215 KIATDISNILINSTPSRDFDGLVGMRAHLEKMKPLLCLDTDEVRI---IGI--------W 263
Query: 637 GPPGTGKTLLARAVAHHTECTF 702
GPPG GKT +AR V + +F
Sbjct: 264 GPPGIGKTTIARVVYNQLSHSF 285
>At4g30490.1 68417.m04329 AFG1-like ATPase family protein contains
Pfam profile: PF03969 AFG1-like ATPase
Length = 497
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 619 KGVLLYGPPGTGKTLLARAVAHHTECTF 702
KG+ LYG GTGKT+L CT+
Sbjct: 162 KGLYLYGGVGTGKTMLMDLFFDQLPCTW 189
>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
Length = 1450
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 595 DALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTE 693
D GI +P + LL GPP GKT L +A++ + E
Sbjct: 192 DVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLE 225
>At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 896
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/86 (23%), Positives = 44/86 (51%)
Frame = +1
Query: 421 NESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDA 600
NES + KI+ + +S M+ P ++ + G+ ++++K ++++
Sbjct: 209 NESGMIEKIVSD-----ISEMLNHSTPSRDFDDLIGMGDHMEKMKPLLDIDSD------- 256
Query: 601 LGIAQPKGVLLYGPPGTGKTLLARAV 678
+ K + ++GPPG GKT +AR++
Sbjct: 257 ----EMKTIGIWGPPGVGKTTIARSL 278
>At1g73170.1 68414.m08466 expressed protein
Length = 666
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 625 VLLYGPPGTGKTLLARAVA 681
+LL GPPG GKT + R VA
Sbjct: 200 LLLIGPPGVGKTTMIREVA 218
>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
Werner helicase interacting protein [Homo sapiens]
GI:14349166; contains Pfam profiles PF00004: ATPase
family associated with various cellular activities
(AAA), PF00627: UBA/TS-N domain; contains
ATP/GTP-binding site motif A (P-loop)
Length = 525
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/23 (39%), Positives = 19/23 (82%)
Frame = +1
Query: 625 VLLYGPPGTGKTLLARAVAHHTE 693
++ +GPPGTGKT +A+++ + ++
Sbjct: 140 IVFWGPPGTGKTSIAKSLINSSK 162
>At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1038
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +1
Query: 496 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 675
+P +E + GLD ++++ ++ L + K + ++GP G GKT +ARA
Sbjct: 176 IPSRDFEEMVGLDAHLRKLDSLL-----------CLNSDEVKMIGIWGPAGIGKTTIARA 224
Query: 676 VAHHTECTF 702
+ + F
Sbjct: 225 LYNQLSTNF 233
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 619 KGVLLYGPPGTGKTLLARAVAHH 687
+ + ++G PG GKT LA+AV +H
Sbjct: 190 RSIGIWGMPGIGKTTLAKAVFNH 212
>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA
helicase GI:4521249 from [Mus musculus]
Length = 473
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 619 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSKL 726
+ +L+ G PGTGK +A +A E F ++GS++
Sbjct: 67 RAILIAGQPGTGKIAIAMGIAKSLGQETPFTMIAGSEI 104
>At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical
to heat shock protein 101 GI:6715468 GB:AAF26423 from
[Arabidopsis thaliana]
Length = 911
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +1
Query: 613 QPKGVLLY-GPPGTGKTLLARAVA 681
QP G L+ GP G GKT LA+A+A
Sbjct: 597 QPTGSFLFLGPTGVGKTELAKALA 620
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +1
Query: 598 ALGIAQPKGVLLY-GPPGTGKTLLARAV 678
ALG+ + + V++ GPPGTGKT + + V
Sbjct: 496 ALGVNKKRPVMIVQGPPGTGKTGMLKEV 523
>At4g26090.1 68417.m03756 disease resistance protein RPS2
(CC-NBS-LRR class), putative domain signature CC-NBS-LRR
exists, suggestive of a disease resistance protein.
identical to RPS2 (gi:13661831)
Length = 909
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 550 IKEVIELPVKHPELFDALGIAQPKGVL-LYGPPGTGKTLLARAV 678
IK V+ ++ + L + +G++ +YGP G GKT L +++
Sbjct: 152 IKSVVGNTTMMEQVLEFLSEEEERGIIGVYGPGGVGKTTLMQSI 195
>At1g14460.1 68414.m01715 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1116
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 490 EKVPDSTYEMVGGLDKQIKEI--KEVIELPVKHPELFDALGIAQPKGVLLY-GPPGTGKT 660
E+ ST E + L ++ K + E+I + L +A+ + V L+ GP GTGKT
Sbjct: 411 EEEGGSTPESIQSLSQKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKT 470
Query: 661 LLARAVAHHTECTFI 705
AR ++ C +
Sbjct: 471 STARILSAALNCDVV 485
>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
PF04950: Protein of unknown function (DUF663)
Length = 1147
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 583 PELFDALGIAQPKGVLLYGPPGTGKTLLARAV 678
P++ G A P V++ GPPG GK+L+ +++
Sbjct: 72 PKIDRNYGEAPPFVVVVQGPPGVGKSLVIKSL 103
>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1046
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 631 LYGPPGTGKTLLARAVAHHTECTF 702
+YGP G GKT +ARA+ +F
Sbjct: 215 IYGPAGIGKTTIARALHSRLSSSF 238
>At4g38870.1 68417.m05504 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 426
Score = 27.9 bits (59), Expect = 7.3
Identities = 24/98 (24%), Positives = 46/98 (46%)
Frame = +2
Query: 164 SSLSPKNLKIFVVFKPSVMNSTLKFVCYARSFSSCKNRDRTSEKWLNQWIKRRSS*KFIL 343
S L P +L I + K + ++F+C ++ ++S + +LN+ +KR S F+
Sbjct: 50 SELLPVDL-IMEILKKLSLKPLIRFLCVSKLWASIIRDPYFMKLFLNESLKRPKSLVFVF 108
Query: 344 KVNSSSI*TRTLILTMSRPIVVSLFATKAIPYTKYYPT 457
+ S ++ L +R I S ++ A T Y+ T
Sbjct: 109 RAQSLGSIFSSVHLKSTREISSSSSSSSASSIT-YHVT 145
>At4g28070.1 68417.m04026 AFG1-like ATPase family protein contains
Pfam profile: PF03969 AFG1-like ATPase
Length = 464
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 607 IAQPKGVLLYGPPGTGKTLLARAVAH 684
++ KG+ LYG GTGKT+L H
Sbjct: 130 VSPVKGLYLYGGVGTGKTMLMDLFFH 155
>At1g79050.1 68414.m09217 DNA repair protein recA identical to DNA
repair protein recA, chloroplast [Precursor] SP:Q39199
from [Arabidopsis thaliana] ;contains Pfam profile:
PF00154 recA bacterial DNA recombination protein
Length = 439
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +1
Query: 598 ALGIAQPKG--VLLYGPPGTGKTLLA 669
ALG PKG V +YGP +GKT LA
Sbjct: 127 ALGGGLPKGRVVEIYGPESSGKTTLA 152
>At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing
protein contains similarity to (R)-specific enoyl-CoA
hydratase PhaJ1 [Pseudomonas oleovorans]
gi|22506675|gb|AAM97601; contains Pfam domain PF01575:
MaoC like domain
Length = 337
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 625 VLLYGPPGTGKTLLARAVAHHTECTFI 705
+L+ G PGTGK+ A A+A T +I
Sbjct: 16 LLITGTPGTGKSTTASALAEATNLRYI 42
>At4g15233.1 68417.m02334 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1168
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 604 GIAQPKGV-LLYGPPGTGKTLLARAVA 681
GI +PK + LL GPP GKT L A++
Sbjct: 159 GIIRPKRMTLLLGPPSCGKTTLLLALS 185
>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1234
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 562 IELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 678
IE +K L L + + V ++GP G GKT +ARA+
Sbjct: 184 IEDHIKELSLLLCLESEEVRMVGIWGPTGIGKTTIARAL 222
>At3g29185.2 68416.m03659 expressed protein
Length = 411
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 277 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDL 366
G V ++ D+KKV VH EGK DL
Sbjct: 333 GQVVQDISSTSDEKKVTTNVHWEGKMSKDL 362
>At3g29185.1 68416.m03658 expressed protein
Length = 433
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 277 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDL 366
G V ++ D+KKV VH EGK DL
Sbjct: 333 GQVVQDISSTSDEKKVTTNVHWEGKMSKDL 362
>At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1215
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 586 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTF 702
EL L + + + ++GPPG GKT + R + + +F
Sbjct: 241 ELLLCLDSCEVRMIGIWGPPGIGKTTIVRFLYNQLSSSF 279
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,602,204
Number of Sequences: 28952
Number of extensions: 288717
Number of successful extensions: 1236
Number of sequences better than 10.0: 151
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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