Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30786
         (767 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    25   0.50 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.6  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   3.6  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   8.2  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 336 PLVDSLGGNGVAHVTSWPAPSKASTIPLP 250
           P+  S+GG+G     S   P+K+ST P P
Sbjct: 46  PVSFSMGGHGSLLSPSGNTPNKSSTSPYP 74


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 409  SVSLVVHVDHFTYRCCG 359
            +V+  + +D F+ RCCG
Sbjct: 962  AVAWTIDLDDFSNRCCG 978


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 113 YNKFTCH*LFHKIKDINAII 54
           Y  F CH LFH +  +N II
Sbjct: 666 YWLFHCHFLFHIVIGMNLII 685



 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 189 DVTTHTKKSSNWRH 148
           D+TTH    S+W H
Sbjct: 277 DLTTHVMLLSDWMH 290


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 189 DVTTHTKKSSNWRH 148
           D+TTH    S+W H
Sbjct: 277 DLTTHVMLLSDWMH 290



 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 104 FTCH*LFHKIKDINAIIR 51
           F CH LFH +  +N +++
Sbjct: 669 FHCHFLFHIVIGMNLVLQ 686


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,198
Number of Sequences: 336
Number of extensions: 3800
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)