Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30786
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    27   3.9  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   5.2  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   6.8  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   6.8  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    25   9.0  

>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 288 WPAPSKASTIPLPRELWLREGIG 220
           WP+ SK  T+ + R LW+ E  G
Sbjct: 92  WPSASKNDTLRVVRGLWMYEDTG 114


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 635 VPVDHHHTAAVQQRPNPPW 691
           VPVDH+    V   PN PW
Sbjct: 507 VPVDHNTPPLVVYMPNTPW 525


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
 Frame = +3

Query: 450 SRGCPSRYQ----RCSRRSS 497
           SR CPS+YQ    RC+R SS
Sbjct: 410 SRSCPSKYQCYSCRCARNSS 429


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 507  YFPLTIACCSAGTERDSLVILAAKVLINA 421
            YFP+   C    TER  L++ + K ++ +
Sbjct: 947  YFPILKLCAEPSTERHVLLVTSLKTMLTS 975


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 453 VILAAKVLINAIPASAFLWSFMSIISLTDAVALTSIIFRPLVDSLGGNG 307
           V+L   +L+N +P   + W F + + L     + +II+ P+  S   +G
Sbjct: 216 VLLVFTILLNQVPPRYYKWIFKASMLLMFIDYVMNIIWVPVATSKKPDG 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,332
Number of Sequences: 5004
Number of extensions: 64569
Number of successful extensions: 176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)