Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30786
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 31 1.0
07_03_0425 - 18070607-18070712,18071771-18072744 31 1.3
02_03_0016 + 13962086-13962326,13962529-13962614,13962652-139627... 31 1.3
02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178 30 1.8
05_02_0099 - 6582498-6582725,6583148-6583235,6583437-6583830,658... 29 3.1
02_04_0352 + 22278514-22278721,22278871-22279136,22279228-22279833 29 3.1
01_01_0321 - 2584332-2584661,2584776-2584883,2584987-2585070,258... 29 3.1
07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,380... 29 4.1
01_01_0244 - 2005152-2005649,2006186-2006254 29 4.1
07_03_0418 + 17979504-17980964 29 5.4
07_03_0415 + 17920383-17921843 29 5.4
03_06_0273 + 32787021-32787434,32788096-32788221,32788305-327883... 29 5.4
07_03_1131 + 24190675-24190814,24190938-24191021,24191628-241917... 28 7.1
07_03_0955 + 22867448-22868248 28 9.4
05_06_0209 - 26389902-26389928,26389981-26390161,26390265-263904... 28 9.4
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -3
Query: 339 RPLVDSLGGNGVAHVTSWPAPSKASTIPLPREL 241
R +V LGG G + PAP+ AST PLP L
Sbjct: 338 RAVVVLLGGRGPEPAAASPAPAAASTPPLPLSL 370
>07_03_0425 - 18070607-18070712,18071771-18072744
Length = 359
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +2
Query: 188 SARAYHVLCVFPIPSRSHNSLGKGIVEALLGAGHEVTW 301
+A A HVL VFP P++ H + LLGAG VT+
Sbjct: 4 AAAAAHVL-VFPFPAQGHINCMMHFATGLLGAGLHVTF 40
>02_03_0016 +
13962086-13962326,13962529-13962614,13962652-13962750,
13963022-13963131,13964024-13964083,13964220-13964304
Length = 226
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 529 GLRDDRVVFPADDRLLQRWYREGQPRDIGSEGPD 428
G + VV ADD + RWY +GQ D EG D
Sbjct: 93 GAEAESVVVFADDAAVVRWYSDGQAVDPRYEGDD 126
>02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178
Length = 1143
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +1
Query: 466 LGTSAAAGDRQREIRRGRHGVLLQRCRGGLRSSTSSALDPVVQRLHNASLGSHHR*XAGR 645
L S A ++ +R R + L+R G R ++ PV ++ + R +
Sbjct: 1033 LNASPQAAKKRLRLRSTRPALALRRTVEGSRRRATAGF-PVEEKRPRVVAEAQERETGPQ 1091
Query: 646 -SPPYRCCSTTPQPPMGFWDRL 708
PP R S P PP+ FW+++
Sbjct: 1092 IRPPCRRRSPPPPPPLIFWEKM 1113
>05_02_0099 -
6582498-6582725,6583148-6583235,6583437-6583830,
6585855-6585990,6586413-6586931
Length = 454
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 586 VVQRLHNASLGSHHR*XAGRSPPYRCCSTTPQPP 687
V +RLH+ L HHR + SPP P PP
Sbjct: 47 VSRRLHSLDLPKHHRRSSSSSPPPMPPPLPPPPP 80
>02_04_0352 + 22278514-22278721,22278871-22279136,22279228-22279833
Length = 359
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -3
Query: 369 DAVALTSIIFRPLVDSLGGNGVAHVTSWPAPSKASTIPLP 250
D V L PL+D GG G A TS A + A+ P P
Sbjct: 204 DVVGLAPCALPPLMDVSGGGGGAGTTSLSATAGAAAAPPP 243
>01_01_0321 -
2584332-2584661,2584776-2584883,2584987-2585070,
2585162-2585221,2585322-2585421,2585504-2585906,
2586183-2586480,2587526-2587711
Length = 522
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +1
Query: 346 NRCERHSICK*NDRHE----RPKKR*CWYGVDQDLRCQYHEAVPLGTSAAAGDRQREIRR 513
NR +RHSIC R E R G D+ L C+ +V G+ ++ G+ +IRR
Sbjct: 113 NRHQRHSICSLGGRRELQGAELLPRLPCPGSDEALECESKASV--GSVSSKGEEVEQIRR 170
Query: 514 GRH 522
H
Sbjct: 171 SSH 173
>07_01_0511 +
3806475-3806876,3807914-3808039,3808120-3808193,
3808278-3808347,3808431-3808486,3808578-3808649,
3808678-3808811,3808967-3809030,3809111-3809240,
3809326-3809541,3809629-3809750,3810527-3810701,
3810788-3810878,3811040-3811197,3811330-3811518,
3813257-3813340,3813362-3813536,3815300-3815955,
3816226-3816648,3816752-3816790
Length = 1151
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -1
Query: 680 WGVVEQQRYGGDRPAXHR*WL-PSEALWRRWTTGSRALEV 564
WGVV + G +L PSE + RRW TG R +
Sbjct: 617 WGVVMSRNSGYSEQVVELDFLYPSEGIHRRWETGYRITSI 656
>01_01_0244 - 2005152-2005649,2006186-2006254
Length = 188
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -3
Query: 339 RPLVDSLGGNGVAHVTSWPAPSKASTIPLPREL 241
R +V LGG G + PAP+ AS PLP L
Sbjct: 92 RAVVVLLGGRGPEPAAASPAPAAASAPPLPLSL 124
>07_03_0418 + 17979504-17980964
Length = 486
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 188 SARAYHVLCVFPIPSRSHNSLGKGIVEALLGAGHEVTW 301
+A A HVL VFP P + H + L+GAG VT+
Sbjct: 4 AAAAAHVL-VFPAPGQGHINCMMHFATGLVGAGLHVTF 40
>07_03_0415 + 17920383-17921843
Length = 486
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 188 SARAYHVLCVFPIPSRSHNSLGKGIVEALLGAGHEVTW 301
+A A HVL VFP P + H + L+GAG VT+
Sbjct: 4 AAAAAHVL-VFPAPGQGHINCMMHFATGLVGAGLHVTF 40
>03_06_0273 +
32787021-32787434,32788096-32788221,32788305-32788378,
32788468-32788537,32788622-32788677,32788762-32788833,
32788945-32789039,32789196-32789262,32789359-32789488,
32789578-32789793,32789887-32790017,32790719-32790893,
32790977-32791067,32792151-32792308,32792763-32792951,
32793066-32793125
Length = 707
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -1
Query: 680 WGVVEQQRYGGDRPAXHR*WL-PSEALWRRWTTGSR 576
WGVV + G +L PSE + RRW TG R
Sbjct: 612 WGVVMSRNAGYSHQVVELDFLYPSEGIHRRWETGYR 647
>07_03_1131 +
24190675-24190814,24190938-24191021,24191628-24191735,
24193212-24193266,24193360-24193404
Length = 143
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -2
Query: 451 DIGSEGPDQRHTSISVSLVVHVDHFTYR 368
++GSE PD RH + + L HV+ FT++
Sbjct: 70 NLGSEVPDTRHIFVDIGLGFHVE-FTWQ 96
>07_03_0955 + 22867448-22868248
Length = 266
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 615 WKPSSMXCRSITTIPLLFNNAPTPHGLLG 701
W +S R + PLL + APTP LG
Sbjct: 73 WPSASTLLRVLPASPLLLSRAPTPESPLG 101
>05_06_0209 -
26389902-26389928,26389981-26390161,26390265-26390407,
26390480-26390588,26390839-26391023,26391428-26392082,
26392392-26392496,26392757-26392844,26392885-26392947,
26393451-26393513,26394328-26394484
Length = 591
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 415 SISVSLVVHVDHFTYRCC 362
SISVS+ +H HF + CC
Sbjct: 379 SISVSMSIHQTHFCFVCC 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,064,214
Number of Sequences: 37544
Number of extensions: 501446
Number of successful extensions: 1548
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1548
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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