Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30786
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7592| Best HMM Match : PI-PLC-Y (HMM E-Value=1.1e-33)               33   0.34 
SB_29034| Best HMM Match : Nucleoplasmin (HMM E-Value=2.2)             32   0.59 
SB_38223| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_51507| Best HMM Match : SH2 (HMM E-Value=2.3e-22)                   31   0.77 
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)             31   1.4  
SB_43818| Best HMM Match : NDT80_PhoG (HMM E-Value=7.6e-12)            29   3.1  
SB_17746| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_40160| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_5243| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.5  
SB_1950| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.5  
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_10219| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_59532| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_43391| Best HMM Match : WGR (HMM E-Value=9.7)                       28   9.5  

>SB_7592| Best HMM Match : PI-PLC-Y (HMM E-Value=1.1e-33)
          Length = 997

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 279 PSKASTIPLPRELWLREGIGNTQSTWYARADVTTHTKKSSNWRHLISEQFQ 127
           P+   T P  R LW  EGI + + T+   A +T   K+ S W++    Q Q
Sbjct: 217 PNAFVTKPACRALWDYEGINDQEMTFCRGAFITNVVKEDSGWKNFRRRQRQ 267


>SB_29034| Best HMM Match : Nucleoplasmin (HMM E-Value=2.2)
          Length = 186

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 18/82 (21%), Positives = 35/82 (42%)
 Frame = +2

Query: 338 LKIIDVSATASVSEMIDMNDQRNADAGMALIRTFAANITRLSLSVPALQQAIVSGKYDAV 517
           L I   +A   + ++  +++  NA   +A +R +       ++S+  LQ A +     A 
Sbjct: 26  LAIRSQAAGHDIKDVAALSNPPNAPVQLAFVRVYCGAQPTCTVSLATLQSAHIDYSTKAA 85

Query: 518 VTESFFNDAEAGYGAVLQVPWI 583
           +        + GYG   QV W+
Sbjct: 86  IIFRIAAKNDKGYGPATQVRWL 107


>SB_38223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 327 DSLGGNGVAH-VTSWPAPSKASTIPLPRELWLREGIGNTQSTWYARADVTTHTK 169
           D L  N + + V+S P P K  +   P+ LW   G+  +Q     RA+ TTH +
Sbjct: 115 DFLDLNSIENEVSSLPPPPKVISGGFPKYLWTPSGLSQSQVRSRNRANGTTHAR 168


>SB_51507| Best HMM Match : SH2 (HMM E-Value=2.3e-22)
          Length = 192

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 279 PSKASTIPLPRELWLREGIGNTQSTWYARADVTTHTKKSSNWRHLISEQ 133
           P+   T P  R LW  EGI + + T+   A +T   K+ S W  L++ +
Sbjct: 122 PNAFVTKPACRALWDYEGINDQEMTFCRGAFITNVVKEDSGWYVLLTNR 170


>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
          Length = 781

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 454 RDIGSEGPDQRHTSISVSLVVHVDHFTYRCCGA 356
           R  G   PDQR+ ++ V++  +V+H ++  CG+
Sbjct: 206 RKKGKPNPDQRYFNLVVAIYAYVEHESFLICGS 238


>SB_43818| Best HMM Match : NDT80_PhoG (HMM E-Value=7.6e-12)
          Length = 347

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 454 RDIGSEGPDQRHTSISVSLVVHVDHFTYRCCGA 356
           R  G   PDQR+ ++ V++  +V H ++  CG+
Sbjct: 194 RKKGKPNPDQRYFNLVVAIYAYVKHESFLICGS 226


>SB_17746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/65 (30%), Positives = 36/65 (55%)
 Frame = +2

Query: 335 GLKIIDVSATASVSEMIDMNDQRNADAGMALIRTFAANITRLSLSVPALQQAIVSGKYDA 514
           G+  I  + TASVSE++  N Q++ D  M L R+  ++I  L +S       I S +++ 
Sbjct: 312 GVSAIVSTVTASVSEILSKNVQKHTDIVM-LARSKLSSIDDL-ISKALTDNQISSDEFNL 369

Query: 515 VVTES 529
           ++ E+
Sbjct: 370 IIKEA 374


>SB_40160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +1

Query: 709 TNIFIYSAMTISNWLNRP 762
           T++F+YS +  ++WLN+P
Sbjct: 38  TSVFVYSELLFADWLNKP 55


>SB_5243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = -2

Query: 637 HXIDDGFQVRHYGDAGQQDPGHLKYCS-VTRLGIVEEGLRDD-RVVFPADDRLLQRWYRE 464
           H IDD  +V+ +  A Q  PG       +T  GI  +G++D    + P  D  +   +  
Sbjct: 598 HKIDDDLRVKEHMQAHQHLPGFRHSLQIITDYGINGDGIKDAFTFLSPVVDTDIFLTWLT 657

Query: 463 GQPRDIGSEGPDQRHTSISV 404
           GQ  D+ S G    +  I+V
Sbjct: 658 GQVNDVISAGLIIHNADINV 677


>SB_1950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 420

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 245 SCGCVKVSGIRRARGTHALTSPHT 174
           S  C +V  I+ AR TH L +PHT
Sbjct: 182 SDNCARVWDIKEARCTHVLDTPHT 205


>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +2

Query: 314  PPKESTKGLKIIDVS--ATASVSEMIDMNDQRNADAGMALIRTFAANITRLSLSVPALQQ 487
            PP  S+  +  ++ S  ATA+ S  ++ N      +G+++    +  +   S  +PA+  
Sbjct: 1199 PPSSSSTTITTLNASVMATATPSASLEANASTMLSSGISVPSIDSTVLPDSSSYIPAVTT 1258

Query: 488  AIVSGKYDAVVTES 529
             + +G YD   T S
Sbjct: 1259 VVQTGSYDMNRTSS 1272


>SB_10219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 581 ILLSSVSIMPHLEAIIDXVPVDHHHTAAVQQRPNPPW 691
           IL+S V + PH   I      D   TA+  +  NPPW
Sbjct: 474 ILVSVVPVTPHYLGIASGELPDSQITASSYRDTNPPW 510


>SB_59532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 221 PIPSRSHNSLGKGIVEALLGAGHEVTWATPFPPKESTKGLKIIDVSATASVSEMI 385
           P PSRSHN L    V  + G    +     F  + S+K  +++  S   +  EMI
Sbjct: 16  PTPSRSHNDLRPAPVLVMWGCASALQQQYSFLARISSKRARLMLASKICTGPEMI 70


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 273 KASTIPLPRELWLREGIGNT-QSTWYARADVTTHTKKSSNWRHL 145
           K S  P P  +WL  G G +   T + + DV   + +SS   HL
Sbjct: 16  KTSAAPSPTRVWLAAGTGESIIHTTHQKKDVYKESTESSGSTHL 59


>SB_43391| Best HMM Match : WGR (HMM E-Value=9.7)
          Length = 247

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
 Frame = -1

Query: 230 KVSGIRRARG---THALTSP---HTPRRAATGDTSFLNNFNALSKY 111
           KV  +RR +    T+ L SP   + PRR  TG+TSF+   +A + Y
Sbjct: 73  KVDFVRRRKKKKVTYDLDSPDLFNVPRRVYTGETSFIQPVSADTSY 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,587,587
Number of Sequences: 59808
Number of extensions: 522565
Number of successful extensions: 1677
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1677
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)