Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30786
         (767 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20850.1 68417.m03025 subtilase family protein contains simil...    29   2.6  
At4g12400.1 68417.m01960 stress-inducible protein, putative simi...    29   4.5  
At1g62740.1 68414.m07081 stress-inducible protein, putative simi...    29   4.5  
At3g15390.1 68416.m01951 expressed protein low similarity to PRL...    28   6.0  
At2g02880.1 68415.m00238 mucin-related similar to putative mucin...    28   6.0  
At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containi...    28   6.0  
At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein ...    28   7.9  
At2g03780.1 68415.m00338 translin family protein similar to SP|Q...    28   7.9  

>At4g20850.1 68417.m03025 subtilase family protein contains
           similarity to Tripeptidyl-peptidase II (EC 3.4.14.10)
           (TPP-II) (Tripeptidyl aminopeptidase)
           (Swiss-Prot:P29144) [Homo sapiens]
          Length = 1380

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 264 TIPLPRELWLREGIGNTQST-WYARADVTTHTKKSSNWRHLI 142
           TIP  R ++LREG    QST W  + D   H + +SN + L+
Sbjct: 643 TIPTSRGIYLREGTACRQSTEWTIQVDPKFH-EGASNLKELV 683


>At4g12400.1 68417.m01960 stress-inducible protein, putative similar
           to sti (stress inducible protein) [Glycine max]
           GI:872116; contains Pfam profile PF00515 TPR Domain
          Length = 530

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = -2

Query: 613 VRHYGDAGQQDPGHLKYCS-----VTRLGIVEEGLRDDRVVFPADDRLLQRWYREG 461
           V+HY +A +++P  ++  S      T+LG + EGL+D       D    + + R+G
Sbjct: 389 VKHYSEAIKRNPNDVRAYSNRAACYTKLGALPEGLKDAEKCIELDPSFTKGYSRKG 444


>At1g62740.1 68414.m07081 stress-inducible protein, putative similar
           to sti (stress inducible protein) [Glycine max]
           GI:872116; contains Pfam profile PF00515 TPR Domain
          Length = 571

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = -2

Query: 613 VRHYGDAGQQDPGHLKYCS-----VTRLGIVEEGLRDDRVVFPADDRLLQRWYREG 461
           VRHY +A +++P   +  S      T+LG + EGL+D       D   L+ + R+G
Sbjct: 402 VRHYTEAIKRNPKDPRAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFLKGYSRKG 457


>At3g15390.1 68416.m01951 expressed protein low similarity to
           PRLI-interacting factor N [Arabidopsis thaliana]
           GI:11139276
          Length = 468

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 242 NSLGKGIVEALLGAGHEVTWATPFPPKESTKGLKI 346
           NS+  G V +++G  +  T      PKE+TK LKI
Sbjct: 98  NSISNGTVSSVIGKEYARTRPISNAPKEATKPLKI 132


>At2g02880.1 68415.m00238 mucin-related similar to putative mucin
           GI:18071389 [Oryza sativa]
          Length = 314

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 311 FPPKESTK-GLKIIDVSATASVSEMIDMNDQRNADAG 418
           FP KEST   ++ IDV A A V +M +  D+R   +G
Sbjct: 73  FPVKESTATAIEEIDVEAKAFVEDMNEHWDERRGKSG 109


>At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 798

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 547 LGIVEEGLRDDRVVFPADDRLLQRWYREGQPRD-IGSEGPDQRHTSISVSL 398
           LG+++E LRD       D    + WYR G+    +G+     R  ++S+SL
Sbjct: 119 LGLLKESLRDCHRALRIDPYYAKAWYRRGKLNTLLGNYKDAFRDITVSMSL 169


>At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 716

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 426 NAIPASAFLWSFMSIISLTDAVALTSIIFRPLVDSLGGNGVAHVT-SWPAPS 274
           +A+P+      + + +SL         +  PL  S  GNG++H   +WP P+
Sbjct: 371 SAVPSPRSNADYAAALSLLPGSPSGVSVMSPLSPSAAGNGMSHSNMAWPQPN 422


>At2g03780.1 68415.m00338 translin family protein similar to
           SP|Q99598 Translin-associated protein X
           (Translin-associated factor X) {Homo sapiens}; contains
           Pfam profile PF01997: Translin family
          Length = 287

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +3

Query: 627 SMXCRSITTIPLLFNNAPTPHGLLGQAD 710
           S+  R +  IPLL +NAPT + LLG AD
Sbjct: 259 SVHVRGLEYIPLLGDNAPTSY-LLGAAD 285


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,882,575
Number of Sequences: 28952
Number of extensions: 361702
Number of successful extensions: 1001
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)