Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30785
         (530 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_9191| Best HMM Match : TolA (HMM E-Value=1)                         29   2.4  
SB_29782| Best HMM Match : RnaseH (HMM E-Value=0.15)                   27   7.2  
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)               27   9.5  
SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)                   27   9.5  
SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)                27   9.5  
SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)           27   9.5  
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)                   27   9.5  

>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1414

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 137 SEPPGPGARSPNS--ACRGTPRVPLPSPP 217
           S PPGPG R   S    RG+P  P+  PP
Sbjct: 861 SPPPGPGYREQRSWDGRRGSPPPPMAPPP 889


>SB_9191| Best HMM Match : TolA (HMM E-Value=1)
          Length = 541

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 137 SEPPGPGARSPNS--ACRGTPRVPLPSPP 217
           S PPGPG R   S    RG+P  P+  PP
Sbjct: 51  SPPPGPGYREQRSWDGRRGSPPPPMAPPP 79


>SB_29782| Best HMM Match : RnaseH (HMM E-Value=0.15)
          Length = 781

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = -1

Query: 227 APTGEERGGGRAACHDRHCSVSELRDRA---ALTL*HFNTYSSKVRKVEKTRTETGLRGS 57
           A  G +R GGR    +  CS+++L  +A   AL   + + Y++ +R +E   T T    +
Sbjct: 489 AELGNKRTGGRWLFVETSCSINDLETQAIFFALKSLYKDVYNAHIR-IEIDNTTTVCYVN 547

Query: 56  EYGGLSAGFVRVDVREV 6
             GG  +       RE+
Sbjct: 548 NIGGSKSRSCNAIAREI 564


>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1021

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 125 NVITSEPPGPGARSPNSACRGTPRVPLPSP 214
           +V +  PP PG+R+  +   G+   P+PSP
Sbjct: 763 SVRSPPPPYPGSRTSGNPHMGSSPAPIPSP 792


>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
          Length = 1249

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -1

Query: 113 SSKVRKVEKTRTETGLRGSEYGGLSAGFV 27
           S K+R ++ +R  T LRGS YGG+ + F+
Sbjct: 209 SKKLRVLDCSRWLTELRGSGYGGMLSLFM 237


>SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)
          Length = 619

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -3

Query: 264 APRHARASRVTSRAYRGGEGRGTRGVPRQALFGERAPGPGG 142
           A    R+  V SR  RGG+  G+ G+  Q   GER  GP G
Sbjct: 142 AAGQGRSEVVKSR--RGGDPMGSIGLVPQGRDGERIEGPQG 180


>SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)
          Length = 455

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 198 TRGVPRQALFGERAPGPGGSDVITF 124
           +RGVP Q  + E   GPGG   + F
Sbjct: 77  SRGVPTQGFYTEEIRGPGGGARVGF 101


>SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)
          Length = 1844

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 75  DGSPGLRIWWSQCGVRPRRCTRSP 4
           DGS G    W   G +PR CT SP
Sbjct: 450 DGSTGDYQPWVNPGSKPRNCTNSP 473


>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
          Length = 1790

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 34   PALRPPYSEPRRPVSVLVFSTLRTLLL 114
            P ++ PY++P RPV+V +   L+ LL+
Sbjct: 1049 PKMQWPYTQPPRPVTVELLLKLQRLLI 1075


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,134,987
Number of Sequences: 59808
Number of extensions: 325929
Number of successful extensions: 1048
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)