Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30785
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81066-1|CAB02970.1|  919|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z68159-3|CAD89733.1|  351|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z68159-2|CAD89732.1|  354|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical...    27   8.4  

>Z81066-1|CAB02970.1|  919|Caenorhabditis elegans Hypothetical
           protein F17B5.2 protein.
          Length = 919

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 59  SPGDPSLFSSSRPCELYYYKC*NVITSEPPGPGARSPNSACRG 187
           +PG+P+    S PC   Y      ++ +PP       +S CRG
Sbjct: 860 APGEPANLYFSPPCIYIYSLAGATLSQKPPNSNGFIDDSYCRG 902


>Z68159-3|CAD89733.1|  351|Caenorhabditis elegans Hypothetical
           protein C33D9.3b protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 125 NVITSEPPGPGARSPNSACRGTPRVPLPSPPL 220
           NV T++ P P + S +S  + TP   LPSPP+
Sbjct: 275 NVSTTDTPIPKS-SKSSPGKSTPTFALPSPPV 305


>Z68159-2|CAD89732.1|  354|Caenorhabditis elegans Hypothetical
           protein C33D9.3a protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 125 NVITSEPPGPGARSPNSACRGTPRVPLPSPPL 220
           NV T++ P P + S +S  + TP   LPSPP+
Sbjct: 278 NVSTTDTPIPKS-SKSSPGKSTPTFALPSPPV 308


>AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical
           protein W10G11.6 protein.
          Length = 426

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 66  ETRLCSRLLDLANFTTISVEML*RQSRPVPELAHRTVPVVARRASPSPLL 215
           +   C+  LD+A+ TT+S   +   + P         PVV   A+P P++
Sbjct: 9   DAEFCAACLDMAS-TTVSTTTVTTTTTPAAVTTTAAPPVVVTTAAPPPVV 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,330,547
Number of Sequences: 27780
Number of extensions: 233245
Number of successful extensions: 753
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)