BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30785 (530 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 32 0.21 At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 29 2.6 At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 29 2.6 At3g11030.1 68416.m01331 expressed protein contains Pfam domain ... 29 2.6 At3g24550.1 68416.m03083 protein kinase family protein contains ... 28 4.5 At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 28 4.5 At4g26690.1 68417.m03846 glycerophosphoryl diester phosphodieste... 27 6.0 At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 27 7.9 At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 27 7.9 >At4g18670.1 68417.m02762 leucine-rich repeat family protein / extensin family protein similar to extensin-like protein [Lycopersicon esculentum] gi|5917664|gb|AAD55979; contains leucine-rich repeats, Pfam:PF00560; contains proline rich extensin domains, INTERPRO:IPR002965 Length = 839 Score = 32.3 bits (70), Expect = 0.21 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%) Frame = +2 Query: 59 SPGDPSLFSSSRPCELYYYKC*N------VITSEP--PGPGARSPNSACRGTPRVPLPSP 214 SPG + FSS P + + C V+ S P P PG P+ + +P + +PSP Sbjct: 380 SPGQCAAFSSLPPVDCGSFGCGRSTRPPVVVPSPPTTPSPGGSPPSPSISPSPPITVPSP 439 Query: 215 P 217 P Sbjct: 440 P 440 Score = 28.3 bits (60), Expect = 3.4 Identities = 14/27 (51%), Positives = 15/27 (55%) Frame = +2 Query: 137 SEPPGPGARSPNSACRGTPRVPLPSPP 217 S P PG SP S TP P+PSPP Sbjct: 538 STPTSPG--SPPSPSSPTPSSPIPSPP 562 >At5g54650.2 68418.m06805 formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02181 Length = 900 Score = 28.7 bits (61), Expect = 2.6 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +2 Query: 143 PPGPGARSPNSACRGTPRVPLPSPP 217 PP P + P+SA G PR P P+PP Sbjct: 372 PPVPAPQMPSSA--GPPRPPPPAPP 394 >At5g54650.1 68418.m06804 formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02181 Length = 900 Score = 28.7 bits (61), Expect = 2.6 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +2 Query: 143 PPGPGARSPNSACRGTPRVPLPSPP 217 PP P + P+SA G PR P P+PP Sbjct: 372 PPVPAPQMPSSA--GPPRPPPPAPP 394 >At3g11030.1 68416.m01331 expressed protein contains Pfam domain PF03005: Arabidopsis proteins of unknown function Length = 451 Score = 28.7 bits (61), Expect = 2.6 Identities = 13/30 (43%), Positives = 14/30 (46%) Frame = +2 Query: 128 VITSEPPGPGARSPNSACRGTPRVPLPSPP 217 V+ EPP P SP P P PSPP Sbjct: 59 VVVDEPPPPPPTSPPPPSPPPPSPPPPSPP 88 >At3g24550.1 68416.m03083 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain Length = 652 Score = 27.9 bits (59), Expect = 4.5 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 3/28 (10%) Frame = +2 Query: 143 PPGPGARSPNSACRGTPRVP---LPSPP 217 PP P PN+ TPR P PSPP Sbjct: 102 PPSPNQGPPNTPSGSTPRTPSNTKPSPP 129 >At2g29210.1 68415.m03550 splicing factor PWI domain-containing protein contains Pfam profile PF01480: PWI domain Length = 878 Score = 27.9 bits (59), Expect = 4.5 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = +3 Query: 135 RQSRPVPELAHRTVPVVARRASPSPLLPCRR 227 R+S P HR+ P RR SPSP P RR Sbjct: 350 RRSPSPPARRHRSPPPARRRRSPSP--PARR 378 >At4g26690.1 68417.m03846 glycerophosphoryl diester phosphodiesterase family protein weak similarity to glycerophosphodiester phosphodiesterase [Borrelia hermsii] GI:1399038; contains Pfam profile PF03009: Glycerophosphoryl diester phosphodiesterase family Length = 759 Score = 27.5 bits (58), Expect = 6.0 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 69 TRLCSRLLDLANFTTISVEML*RQSRPVPEL 161 T C +DL N TT+S+ +S VPEL Sbjct: 402 TPFCLSSIDLGNSTTVSLTAFRNRSTTVPEL 432 >At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein Lycopersicon esculentum, proline-rich cell wall protein [Medicago sativa] GI:3818416; contains Pfam profile PF00234 Protease inhibitor/seed storage/LTP family Length = 428 Score = 27.1 bits (57), Expect = 7.9 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +2 Query: 128 VITSEPPGPGARSPNSACRGTPRVPLPSPP 217 V+T PP P +P + C P P P PP Sbjct: 150 VVTPPPPTP---TPEAPCPPPPPTPYPPPP 176 >At3g19020.1 68416.m02415 leucine-rich repeat family protein / extensin family protein similar to extensin-like protein [Lycopersicon esculentum] gi|5917664|gb|AAD55979; contains leucine-rich repeats, Pfam:PF00560; contains proline rich extensin domains, INTERPRO:IPR002965 Length = 956 Score = 27.1 bits (57), Expect = 7.9 Identities = 17/55 (30%), Positives = 21/55 (38%) Frame = +2 Query: 53 ILSPGDPSLFSSSRPCELYYYKC*NVITSEPPGPGARSPNSACRGTPRVPLPSPP 217 + SP P +FS P +Y PP P SP P P+ SPP Sbjct: 731 VQSPPPPPVFSPPPPAPIY----------SPPPPPVHSPPPPVHSPPPPPVHSPP 775 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,729,335 Number of Sequences: 28952 Number of extensions: 209641 Number of successful extensions: 701 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 602 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 699 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 987020800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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