Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30785
         (530 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    32   0.21 
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro...    29   2.6  
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro...    29   2.6  
At3g11030.1 68416.m01331 expressed protein contains Pfam domain ...    29   2.6  
At3g24550.1 68416.m03083 protein kinase family protein contains ...    28   4.5  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    28   4.5  
At4g26690.1 68417.m03846 glycerophosphoryl diester phosphodieste...    27   6.0  
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t...    27   7.9  
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    27   7.9  

>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
 Frame = +2

Query: 59  SPGDPSLFSSSRPCELYYYKC*N------VITSEP--PGPGARSPNSACRGTPRVPLPSP 214
           SPG  + FSS  P +   + C        V+ S P  P PG   P+ +   +P + +PSP
Sbjct: 380 SPGQCAAFSSLPPVDCGSFGCGRSTRPPVVVPSPPTTPSPGGSPPSPSISPSPPITVPSP 439

Query: 215 P 217
           P
Sbjct: 440 P 440



 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +2

Query: 137 SEPPGPGARSPNSACRGTPRVPLPSPP 217
           S P  PG  SP S    TP  P+PSPP
Sbjct: 538 STPTSPG--SPPSPSSPTPSSPIPSPP 562


>At5g54650.2 68418.m06805 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 143 PPGPGARSPNSACRGTPRVPLPSPP 217
           PP P  + P+SA  G PR P P+PP
Sbjct: 372 PPVPAPQMPSSA--GPPRPPPPAPP 394


>At5g54650.1 68418.m06804 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 143 PPGPGARSPNSACRGTPRVPLPSPP 217
           PP P  + P+SA  G PR P P+PP
Sbjct: 372 PPVPAPQMPSSA--GPPRPPPPAPP 394


>At3g11030.1 68416.m01331 expressed protein contains Pfam domain
           PF03005: Arabidopsis proteins of unknown function
          Length = 451

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +2

Query: 128 VITSEPPGPGARSPNSACRGTPRVPLPSPP 217
           V+  EPP P   SP       P  P PSPP
Sbjct: 59  VVVDEPPPPPPTSPPPPSPPPPSPPPPSPP 88


>At3g24550.1 68416.m03083 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 652

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
 Frame = +2

Query: 143 PPGPGARSPNSACRGTPRVP---LPSPP 217
           PP P    PN+    TPR P    PSPP
Sbjct: 102 PPSPNQGPPNTPSGSTPRTPSNTKPSPP 129


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +3

Query: 135 RQSRPVPELAHRTVPVVARRASPSPLLPCRR 227
           R+S   P   HR+ P   RR SPSP  P RR
Sbjct: 350 RRSPSPPARRHRSPPPARRRRSPSP--PARR 378


>At4g26690.1 68417.m03846 glycerophosphoryl diester
           phosphodiesterase family protein weak similarity to
           glycerophosphodiester phosphodiesterase [Borrelia
           hermsii] GI:1399038; contains Pfam profile PF03009:
           Glycerophosphoryl diester phosphodiesterase family
          Length = 759

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 69  TRLCSRLLDLANFTTISVEML*RQSRPVPEL 161
           T  C   +DL N TT+S+     +S  VPEL
Sbjct: 402 TPFCLSSIDLGNSTTVSLTAFRNRSTTVPEL 432


>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
           Lycopersicon esculentum, proline-rich cell wall protein
           [Medicago sativa] GI:3818416; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 428

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 128 VITSEPPGPGARSPNSACRGTPRVPLPSPP 217
           V+T  PP P   +P + C   P  P P PP
Sbjct: 150 VVTPPPPTP---TPEAPCPPPPPTPYPPPP 176


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/55 (30%), Positives = 21/55 (38%)
 Frame = +2

Query: 53  ILSPGDPSLFSSSRPCELYYYKC*NVITSEPPGPGARSPNSACRGTPRVPLPSPP 217
           + SP  P +FS   P  +Y           PP P   SP       P  P+ SPP
Sbjct: 731 VQSPPPPPVFSPPPPAPIY----------SPPPPPVHSPPPPVHSPPPPPVHSPP 775


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,729,335
Number of Sequences: 28952
Number of extensions: 209641
Number of successful extensions: 701
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)