Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30784
         (604 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)               28   6.7  

>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -1

Query: 559  EGITSCNKNQTRKTIICVITGGRTSCESARVGTTAPPISAVKQ*CVSV*RMGQPL 395
            +G T    +  R T + + TGG T+   +  GT A P+S      V + RM Q L
Sbjct: 1212 QGTTVSPMSMDRTTAVPISTGGTTTAPRSTDGTAAAPMSTDGTTAVPIIRMEQLL 1266



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 559  EGITSCNKNQTRKTIICVITGGRTSCESARVGTTAPPIS 443
            +G T+  ++  R T   +IT G T+   +  GTTA P+S
Sbjct: 1651 DGTTAVPRSMDRTTAAPMITDGTTAAPMSTDGTTAVPMS 1689


>SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)
          Length = 173

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 550 TSCNKNQTRKTIICVITGGRTSCESAR 470
           T+C+K + R   IC + GGR  C   R
Sbjct: 102 TACSKVRCRGNSICKVAGGRARCVPLR 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,904,584
Number of Sequences: 59808
Number of extensions: 380666
Number of successful extensions: 844
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)