Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30784
         (604 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria...    28   5.5  
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,...    28   5.5  
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria...    28   5.5  

>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
           identical to SP|P83484 ATP synthase beta chain 2,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; strong similarity to SP|P17614 ATP synthase
           beta chain, mitochondrial precursor (EC 3.6.3.14)
           {Nicotiana plumbaginifolia}; contains Pfam profiles
           PF00006: ATP synthase alpha/beta family
           nucleotide-binding domain, PF00306: ATP synthase ab C
           terminal, PF02874: ATP synthase alpha/beta family
           beta-barrel domain; supporting cDNA
           gi|26452187|dbj|AK118582.1|
          Length = 556

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 444 EIGGAVVPTRADSQEVLPPVITQIIV 521
           ++ GA+V  R + QE LPP++T + V
Sbjct: 88  QVIGAIVDVRFEDQEGLPPIMTSLEV 113


>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
           putative strong similarity to SP|P83483 ATP synthase
           beta chain 1, mitochondrial precursor (EC 3.6.3.14)
           {Arabidopsis thaliana}, SP|P17614 ATP synthase beta
           chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
           plumbaginifolia}; contains Pfam profiles PF00006: ATP
           synthase alpha/beta family nucleotide-binding domain,
           PF00306: ATP synthase ab C terminal, PF02874: ATP
           synthase alpha/beta family beta-barrel domain
          Length = 559

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 444 EIGGAVVPTRADSQEVLPPVITQIIV 521
           ++ GA+V  R + QE LPP++T + V
Sbjct: 91  QVIGAIVDVRFEDQEGLPPIMTSLEV 116


>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
           identical to SP|P83483 ATP synthase beta chain 1,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; strong similarity to SP|P17614 ATP synthase
           beta chain, mitochondrial precursor (EC 3.6.3.14)
           {Nicotiana plumbaginifolia}; contains Pfam profiles
           PF00006: ATP synthase alpha/beta family
           nucleotide-binding domain, PF00306: ATP synthase ab C
           terminal, PF02874: ATP synthase alpha/beta family
           beta-barrel domain; supporting cDNA
           gi|26452102|dbj|AK118538.1|
          Length = 556

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 444 EIGGAVVPTRADSQEVLPPVITQIIV 521
           ++ GA+V  R + QE LPP++T + V
Sbjct: 88  QVIGAIVDVRFEDQEGLPPIMTSLEV 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,940,785
Number of Sequences: 28952
Number of extensions: 258230
Number of successful extensions: 451
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)