Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30780
(667 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0731 - 6516894-6517473,6517485-6519574 32 0.47
12_01_0727 + 6446283-6449300 32 0.47
01_05_0161 - 18757122-18757331,18757931-18758488 31 0.62
11_01_0799 + 7035380-7036148,7036587-7037080 31 1.1
04_02_0008 + 8473198-8475523,8475618-8475967 30 1.4
11_01_0679 - 5550070-5550201,5550309-5550454,5550577-5551219 30 1.9
02_01_0232 + 1543597-1543800,1544189-1544377,1544695-1544859,154... 30 1.9
01_01_0145 + 1327172-1327362,1327491-1328169 29 2.5
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143... 29 3.3
12_01_0715 - 6230393-6231559,6233234-6234553 29 4.4
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 29 4.4
12_01_0741 + 6649988-6653065 28 5.8
11_01_0606 + 4831102-4833033 28 5.8
01_01_0418 - 3142659-3145622 28 5.8
02_01_0302 - 2021221-2023305 28 7.7
>12_01_0731 - 6516894-6517473,6517485-6519574
Length = 889
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 513 NSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP 611
NS G I P+ G+ L ++LSNNNL L P
Sbjct: 633 NSISGNIPPSICDGIKSLQLIDLSNNNLTGLIP 665
>12_01_0727 + 6446283-6449300
Length = 1005
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 513 NSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP 611
NS G I P+ G+ L ++LSNNNL L P
Sbjct: 626 NSISGNIPPSICDGIKSLQLIDLSNNNLTGLIP 658
>01_05_0161 - 18757122-18757331,18757931-18758488
Length = 255
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -3
Query: 158 LPGPCPHVVANSLTSVQPLNNGYT*FLES 72
LP P PHV++N + +Q L N YT L S
Sbjct: 180 LPRPTPHVISNIIKIMQNLRNAYTLALPS 208
>11_01_0799 + 7035380-7036148,7036587-7037080
Length = 420
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +3
Query: 195 GESINKTVKKDKDA---DNLLDQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQ--GYRQA 359
G+ K+ KK K+ NLL + +++ +++E P DC S+ Q G
Sbjct: 333 GKPRGKSAKKLKELAGITNLLSSGSILKESDFASDVHSETDSTPSDCSVSLLQKMGVEMC 392
Query: 360 KCSFLEIGTQKFGDDILDLV 419
S E+ K G LDLV
Sbjct: 393 GLSLEEVAESKLGGQKLDLV 412
>04_02_0008 + 8473198-8475523,8475618-8475967
Length = 891
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +3
Query: 405 ILDLVVENADPRYPINLDDFMFKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLS 584
+L+L V N D PI L + LGL + N+ + + P +H+L +N S
Sbjct: 383 MLNLSVNNLDGSIPIELVNISSLSLGLD------LSNNKLSGLIPQQVGTLHNLGHLNFS 436
Query: 585 NNNLKSLHPET 617
NN L P +
Sbjct: 437 NNQLSGQIPSS 447
>11_01_0679 - 5550070-5550201,5550309-5550454,5550577-5551219
Length = 306
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 276 EYQEVLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKF 395
+ +E Y++ CP D C V Q + QAK L +QKF
Sbjct: 225 DLEECPYDDCDNCPSDNNCKVLQAFSQAKNLALVADSQKF 264
>02_01_0232 +
1543597-1543800,1544189-1544377,1544695-1544859,
1545199-1545459,1546059-1546271,1546365-1546587,
1547974-1548149
Length = 476
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 311 LSQRLHMLCISGIQTSQVQLPRNRY 385
L QRL +LCI G+ T +++ R+RY
Sbjct: 445 LMQRLTVLCIRGVSTYPIKIIRSRY 469
>01_01_0145 + 1327172-1327362,1327491-1328169
Length = 289
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -2
Query: 345 PEIQSICSLW-DRACPRCTKPLGIPRVR 265
P S W DRACP C +P+G R R
Sbjct: 70 PRAAPAASSWMDRACPSCNEPIGDIRCR 97
>01_05_0195 - 19111983-19112477,19112646-19113950,19114053-19114322,
19118884-19118950,19119229-19119284,19119530-19119590,
19120181-19120297,19120570-19120682,19120774-19120848,
19121464-19122045,19122056-19122271,19122372-19122497,
19126152-19126190,19126266-19126360,19126423-19126962,
19127102-19127327,19127385-19127437,19127534-19127701,
19128353-19128707,19128785-19128876,19129891-19129993
Length = 1717
Score = 29.1 bits (62), Expect = 3.3
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 3/130 (2%)
Frame = +3
Query: 243 LLDQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLVV 422
+ + E Y+P+ Y+E L+ R + S+S +E G DD +DL
Sbjct: 1492 IFPESEQYDPSSYEEYLHWYSGVTRRYLVPSISDD--------VEAGPSLQPDDSIDLQY 1543
Query: 423 ENADPRYPINLDDF--MFKKLGLHQVATVKIVNSTIGYIAPNAFHGV-HDLYAVNLSNNN 593
+ P +D M KK + +T + + + F V HDL + + +
Sbjct: 1544 QAKAPMIRKAVDKLHGMVKKAKMAMTSTADTTTQALVFEFLHGFQDVLHDLGEIKENGGS 1603
Query: 594 LKSLHPETFA 623
S H E+ A
Sbjct: 1604 ATSPHVESAA 1613
>12_01_0715 - 6230393-6231559,6233234-6234553
Length = 828
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 513 NSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP 611
NS G I P+ + L ++LSNNNL L P
Sbjct: 548 NSISGNIPPSICDRIKSLQLIDLSNNNLTGLIP 580
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = -2
Query: 366 CTWLVCIPEIQSICSLWDRACPRCTKPLGIPRVRNPHI 253
C L C P IQ + R CP C P G VR I
Sbjct: 752 CFHLFCSPCIQRNLEIRHRKCPGCGTPFGQSDVREVKI 789
>12_01_0741 + 6649988-6653065
Length = 1025
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 513 NSTIGYIAPNAFHGVHDLYAVNLSNNNL 596
NS +G + ++ + +LY +NLSNN L
Sbjct: 464 NSFVGIVELTSYSKLQNLYVLNLSNNKL 491
>11_01_0606 + 4831102-4833033
Length = 643
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 483 LHQVATVKI-VNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPET 617
L Q+ +K+ N+ GYI P F G+ ++ +NLS N+ P T
Sbjct: 419 LQQLEVIKLQTNNFSGYI-PRIFSGMTNMEVLNLSANSFSGEIPST 463
>01_01_0418 - 3142659-3145622
Length = 987
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 513 NSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPE 614
N+ IG + ++F + DL+++NLSNN L + E
Sbjct: 431 NNFIGTLELSSFWKLPDLFSLNLSNNKLSVVDGE 464
>02_01_0302 - 2021221-2023305
Length = 694
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 477 LGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPE 614
LGL +A + + ++ + P+ F + L+ ++LSNN PE
Sbjct: 129 LGLPDLALIHLNSNRFCGVVPDTFRRLRLLHELDLSNNRFVGAFPE 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,970,995
Number of Sequences: 37544
Number of extensions: 350986
Number of successful extensions: 1258
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -