Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30780
(667 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36180.1 68417.m05148 leucine-rich repeat family protein cont... 32 0.39
At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar... 29 2.1
At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar... 29 2.8
At2g06140.1 68415.m00675 hypothetical protein 29 2.8
At5g49290.1 68418.m06100 leucine-rich repeat family protein cont... 29 3.7
At3g11330.1 68416.m01378 leucine-rich repeat family protein 28 4.9
At1g09910.1 68414.m01115 expressed protein 28 4.9
At4g29180.1 68417.m04175 leucine-rich repeat protein kinase, put... 28 6.4
At2g23300.1 68415.m02781 leucine-rich repeat transmembrane prote... 28 6.4
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont... 28 6.4
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 28 6.4
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 28 6.4
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 27 8.5
At3g25020.1 68416.m03127 disease resistance family protein conta... 27 8.5
At3g24982.1 68416.m03125 leucine-rich repeat family protein, 5' ... 27 8.5
At1g58190.1 68414.m06605 leucine-rich repeat family protein cont... 27 8.5
>At4g36180.1 68417.m05148 leucine-rich repeat family protein
contains protein kinase domain, Pfam:PF00069; contains
leucine-rich repeats, Pfam:PF00560
Length = 1136
Score = 31.9 bits (69), Expect = 0.39
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +3
Query: 408 LDLVVENADPRYPINLDDFMFKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSN 587
LDL +N P+ L GL V + + + + P F + L VNLS+
Sbjct: 505 LDLSKQNMSGEVPVELS-------GLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSS 557
Query: 588 NNLKSLHPETF 620
N+ P+TF
Sbjct: 558 NSFSGEIPQTF 568
>At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar to
receptor-like protein kinase (Ipomoea nil) (U77888)
Length = 1029
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 432 DPRYPINLDDFMFKKLGLHQVATVKIVNSTIGYIAP 539
D + DF K+ LH+ TV +V + GYIAP
Sbjct: 863 DSNLEARIADFGLAKMMLHKNETVSMVAGSYGYIAP 898
>At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar to
ASC-1 complex subunit P200 [Homo sapiens] GI:12061185;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2146
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 193 SANLSIKPSRKTKTPTTYWINMRITNPRNTKRFCTTRTGPVPETAYALYLRDT 351
+ L K S K P+T I + T+ RN+ R R V + A+ L L DT
Sbjct: 2036 NVRLQKKDSDGKKKPSTLEIRLEKTSKRNSSRALAPRFPKVKDEAWWLVLGDT 2088
>At2g06140.1 68415.m00675 hypothetical protein
Length = 633
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 198 ESINKTVKKDKDADNLLDQYEDYEPAEYQE 287
ES+++ + DK DNL + E +EP E +E
Sbjct: 588 ESLDRILDLDKKVDNLTTRIEGHEPMESEE 617
>At5g49290.1 68418.m06100 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 888
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +3
Query: 438 RYPINLDDFMFKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPET 617
RY + F F + L+ + + + ++ + + P + L A+NLS+N L S P++
Sbjct: 683 RYDSYIGAFQFSEGTLNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDS 742
Query: 618 FA 623
F+
Sbjct: 743 FS 744
>At3g11330.1 68416.m01378 leucine-rich repeat family protein
Length = 499
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 531 IAPNAFHGVHDLYAVNLSNNNLKSLHPETFA 623
+ P AF + L +NLSNN L+S+ P++ A
Sbjct: 212 LLPEAFGRIQGLLVLNLSNNKLESI-PDSIA 241
>At1g09910.1 68414.m01115 expressed protein
Length = 675
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 531 IAPNAFHGVHDLYAVNLSNNNL 596
IA + HGV+ LYAVN+ N L
Sbjct: 621 IARHGIHGVYMLYAVNIPGNRL 642
>At4g29180.1 68417.m04175 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 911
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 543 AFHGVHDLYAVNLSNNNLKSLHPETFA 623
AF + L +++LSNNNLK + PE A
Sbjct: 429 AFRNLSLLESLDLSNNNLKGIVPEFLA 455
>At2g23300.1 68415.m02781 leucine-rich repeat transmembrane protein
kinase, putative
Length = 773
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 489 QVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLK-SLHPETFA 623
+V T+ + NS + P+ + +L ++NLSNN+L SL E FA
Sbjct: 76 RVVTLSLPNSNLVGSIPSDLGFLQNLQSLNLSNNSLNGSLPVEFFA 121
>At1g74190.1 68414.m08592 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.1
[Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
Length = 965
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 537 PNAFHGVHDLYAVNLSNNNLKSLHPETFA 623
P F G+ +L A+NLS+NNL + P++ +
Sbjct: 796 PVEFGGLLELRALNLSHNNLSGVIPKSIS 824
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 27.9 bits (59), Expect = 6.4
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = +3
Query: 327 ICSVSQGYRQAKCSFLEIGTQKFGDDILDLVVENADPRYPINLDDFMFK--KLGLHQVAT 500
+ S+SQG + ++L+ T+ FG I + N P+ + + +F K G +A
Sbjct: 190 LSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFTACKSGDFDIAN 249
Query: 501 VKIVNSTI-GYIAPNAFHGVHDLYA 572
++ N GY A + + D+ A
Sbjct: 250 KEVDNIVAEGYPASQIINQLFDIVA 274
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 27.9 bits (59), Expect = 6.4
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = +3
Query: 327 ICSVSQGYRQAKCSFLEIGTQKFGDDILDLVVENADPRYPINLDDFMFK--KLGLHQVAT 500
+ S+SQG + ++L+ T+ FG I + N P+ + + +F K G +A
Sbjct: 202 LSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFTACKSGDFDIAN 261
Query: 501 VKIVNSTI-GYIAPNAFHGVHDLYA 572
++ N GY A + + D+ A
Sbjct: 262 KEVDNIVAEGYPASQIINQLFDIVA 286
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 27.5 bits (58), Expect = 8.5
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = -3
Query: 533 DITNR--AVHDFYSSNLVKSEFFEHEVV*INRVAGIRVFDHEIKDIIAELLCTDFEEAAL 360
D+ NR +HD SS LV S+ V + R+ + + D++ ELL + + +
Sbjct: 711 DLFNRKCVLHDSLSS-LVSSDVNLSSTVKVKRMKNWYLLIFLVGDLVVELLSWYEDSSVI 769
Query: 359 GLSVSLRYRAYAVSGTGPVLVV 294
L +++ + +S +G LVV
Sbjct: 770 DLDCTIKVISVKLSKSGSPLVV 791
>At3g25020.1 68416.m03127 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 890
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 537 PNAFHGVHDLYAVNLSNNNLKSLHPE 614
PN F +H+L + LSNN + PE
Sbjct: 406 PNVFKTLHNLEYIALSNNRISGKFPE 431
>At3g24982.1 68416.m03125 leucine-rich repeat family protein, 5'
fragment contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611 (19 copies); contains
similarity to GB:AAD13301 from [Lycopersicon esculentum]
Length = 681
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 537 PNAFHGVHDLYAVNLSNNNLKSLHPE 614
PN F +H+L + LSNN + PE
Sbjct: 438 PNVFKTLHNLEYIALSNNRISGKFPE 463
>At1g58190.1 68414.m06605 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 1784
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 513 NSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFA 623
N IG I P + A+NLS+N+L L PE+F+
Sbjct: 756 NELIGEI-PRELGDFQRIRALNLSHNSLSGLVPESFS 791
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 489 QVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP 611
Q++ +++ N + + P+ DL+ +NLSNN L + P
Sbjct: 1177 QLSVIELQNCNLENV-PSFIQHQKDLHVINLSNNKLTGVFP 1216
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,639,978
Number of Sequences: 28952
Number of extensions: 281040
Number of successful extensions: 922
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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