Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30779
         (677 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    42   0.014
UniRef50_Q9LEW3 Cluster: Nucleoid DNA-binding protein cnd41-like...    33   4.8  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 41.9 bits (94), Expect = 0.014
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = -1

Query: 422 FKVTPFLLHRWVDELTAHLVLSGCRSP 342
           F ++ FLL RWVDELTAHLVLSG  SP
Sbjct: 149 FCLSRFLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_Q9LEW3 Cluster: Nucleoid DNA-binding protein cnd41-like
           protein; n=2; Arabidopsis thaliana|Rep: Nucleoid
           DNA-binding protein cnd41-like protein - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 464

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
 Frame = +1

Query: 379 SSSTHLCNKKGVTLKKKSYL*IL-----RHP*NWGFDTPLYRDVVFENRCSSSMGHCQPQ 543
           + ST L  K G+TL   +Y+  +     +H  +  FDT    D+ +  +C   +G C  Q
Sbjct: 114 AKSTELPAKSGITLGSGNYIVTIGIGTPKHDLSLVFDTG--SDLTW-TQCEPCLGSCYSQ 170

Query: 544 KQSRF--TKSTTFSHLGCST 597
           K+ +F  + S+T+ ++ CS+
Sbjct: 171 KEPKFNPSSSSTYQNVSCSS 190


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 745,453,846
Number of Sequences: 1657284
Number of extensions: 16128351
Number of successful extensions: 33873
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33869
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)