Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30779
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23935| Best HMM Match : bZIP_Maf (HMM E-Value=0.76)                 30   1.5  
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   6.0  

>SB_23935| Best HMM Match : bZIP_Maf (HMM E-Value=0.76)
          Length = 715

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 584 RWEKVVDFVKRLCFCGWQ*PMLLEQRFSN 498
           RW+KVVD  ++ C   W+   + E RFSN
Sbjct: 536 RWKKVVDIFRKDCDSSWE---VFESRFSN 561


>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 234  HPVYFYREAVMRFGLKGEAAV 296
            HPV +YR   +RFGL+G   V
Sbjct: 4013 HPVAWYRHISLRFGLRGRRIV 4033


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,518,816
Number of Sequences: 59808
Number of extensions: 527040
Number of successful extensions: 1090
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)