Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30779
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10760.1 68418.m01250 aspartyl protease family protein contai...    33   0.13 
At5g66590.1 68418.m08394 allergen V5/Tpx-1-related family protei...    29   3.7  
At1g31000.1 68414.m03796 F-box family protein contains F-box dom...    29   3.7  

>At5g10760.1 68418.m01250 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 464

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
 Frame = +1

Query: 379 SSSTHLCNKKGVTLKKKSYL*IL-----RHP*NWGFDTPLYRDVVFENRCSSSMGHCQPQ 543
           + ST L  K G+TL   +Y+  +     +H  +  FDT    D+ +  +C   +G C  Q
Sbjct: 114 AKSTELPAKSGITLGSGNYIVTIGIGTPKHDLSLVFDTG--SDLTW-TQCEPCLGSCYSQ 170

Query: 544 KQSRF--TKSTTFSHLGCST 597
           K+ +F  + S+T+ ++ CS+
Sbjct: 171 KEPKFNPSSSSTYQNVSCSS 190


>At5g66590.1 68418.m08394 allergen V5/Tpx-1-related family protein
           contains similarity to SP|Q41495 STS14 protein precursor
           {Solanum tuberosum}; contains Pfam profile PF00188:
           SCP-like extracellular protein
          Length = 185

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 467 ALTHHYIAMLCLRTAVLVAWVIASHKNK-VASQNRPPSPTLDAQLNQSTE 613
           ALTHH I +  L  +V      A  K K + S + PP PT+ A     T+
Sbjct: 2   ALTHHIIFVALLVISVKAISPAAKLKPKQIVSTSPPPPPTISAAAKAFTD 51


>At1g31000.1 68414.m03796 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 363

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 156 LVVINIGTGELIFSKYLL*VRTGRYHHPVYFYREAVMRF 272
           L+  NI TGE+IF+ Y   VR G  H   Y  +   +RF
Sbjct: 295 LITGNIHTGEIIFAPYDCDVRFGMTHVVYYDLKTNRLRF 333


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,219,448
Number of Sequences: 28952
Number of extensions: 367091
Number of successful extensions: 823
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)