Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30770
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 57 2e-08
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 57 2e-08
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 46 2e-05
04_04_1162 - 31383886-31384644 31 1.1
05_01_0534 - 4601844-4602297,4602689-4602847,4602947-4603514,460... 29 2.6
11_06_0409 - 23217558-23218355,23218808-23219297,23219515-232195... 29 3.5
06_02_0248 + 13468100-13468336,13468426-13468569,13469044-134698... 29 3.5
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422... 29 4.6
10_08_0019 - 14167952-14171059 28 6.1
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395... 28 6.1
10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657 28 8.1
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 28 8.1
02_05_0240 - 27110752-27111180 28 8.1
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 56.8 bits (131), Expect = 2e-08
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 8/87 (9%)
Frame = +3
Query: 315 RNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVAYIPGIG--HNLQEH 485
+ P G+ AKG+VL+ + + K+PNSA RKC V+L NGK++ A++P G + ++E+
Sbjct: 37 KKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEEN 96
Query: 486 NVVLVR-VGR----LKDCPGVKLKCVR 551
+ VL+ GR + D PGV+ K V+
Sbjct: 97 DEVLIAGFGRKGHAVGDIPGVRFKVVK 123
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 56.8 bits (131), Expect = 2e-08
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 8/87 (9%)
Frame = +3
Query: 315 RNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVAYIPGIG--HNLQEH 485
+ P G+ AKG+VL+ + + K+PNSA RKC V+L NGK++ A++P G + ++E+
Sbjct: 37 KKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEEN 96
Query: 486 NVVLVR-VGR----LKDCPGVKLKCVR 551
+ VL+ GR + D PGV+ K V+
Sbjct: 97 DEVLIAGFGRKGHAVGDIPGVRFKVVK 123
Score = 56.8 bits (131), Expect = 2e-08
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 8/87 (9%)
Frame = +3
Query: 315 RNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVAYIPGIG--HNLQEH 485
+ P G+ AKG+VL+ + + K+PNSA RKC V+L NGK++ A++P G + ++E+
Sbjct: 207 KKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEEN 266
Query: 486 NVVLVR-VGR----LKDCPGVKLKCVR 551
+ VL+ GR + D PGV+ K V+
Sbjct: 267 DEVLIAGFGRKGHAVGDIPGVRFKVVK 293
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Frame = +3
Query: 315 RNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVAYIPGIG--HNLQEH 485
+ P G+ AKG+VL+ + + K+PNSA KC V+L NGK++ A++P G + ++E+
Sbjct: 108 KKPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKEN 167
Query: 486 NVVLV 500
V V
Sbjct: 168 EVAYV 172
>04_04_1162 - 31383886-31384644
Length = 252
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -2
Query: 561 RACLAHTLVSRRDNLLTFPLLPGPRCVP-ASYVRCRVYTPPFPCRLTILPERIYGSR 394
R CL HT V RR + L P A+ VRC P + + PER Y R
Sbjct: 15 RCCLHHTTVLRRHVYVRLQLGPTRELRGGANAVRCSAAVHEIPAPIPLKPERKYAPR 71
>05_01_0534 -
4601844-4602297,4602689-4602847,4602947-4603514,
4604853-4605246
Length = 524
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/84 (25%), Positives = 33/84 (39%)
Frame = -3
Query: 482 FLQVMSDAGYIRHHFLAV*QSYQNAFTVRGVRLLRFFYYGL*NDTLSEGIPVKRIPRFPL 303
F +V DAG H F + + Y ++ G RLL F+ L P R +
Sbjct: 306 FRRVWPDAGDDYHRFCSAMEEYDSSMRALGERLLAMFFKAL--GLAGNDAPGGETER-KI 362
Query: 302 FNVRSGSVHLGQRRHCPRDEASLG 231
+ ++HL CP + +G
Sbjct: 363 RETLTSTIHLNMFPRCPDPDRVVG 386
>11_06_0409 -
23217558-23218355,23218808-23219297,23219515-23219591,
23219624-23219863,23220338-23220481,23220522-23220582,
23220875-23220934,23221097-23221192,23221306-23221398,
23221494-23221585
Length = 716
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Frame = +2
Query: 95 SSKDESYKKRNVAPISRLQDTVHNSQSNSTGGF----NKTNRAIVQ--FSNSPNWPHHEG 256
S + Y+K + P SR + H G N+T + ++Q F+N N HHE
Sbjct: 98 SIQQGGYQKNVIGPQSRTKPAPHLQFRKPEGPISIPENRTRKHLIQNAFANQKNHEHHEQ 157
Query: 257 NGV 265
N V
Sbjct: 158 NKV 160
>06_02_0248 +
13468100-13468336,13468426-13468569,13469044-13469808,
13470272-13470564,13470642-13470833,13471151-13471229,
13471339-13471431,13471519-13471704
Length = 662
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Frame = +3
Query: 291 PHIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRLSNGKEMVAY----IP 458
P KRK++ A VV T + KPKK K +L++ + E + +P
Sbjct: 83 PRRSKRKAQAATEPEAEATAVVRTTALSKPKKRRGERGKNMLLKEAKQDEEMEKAGKPVP 142
Query: 459 GIGHNLQEHNVVLVR 503
HN Q N V R
Sbjct: 143 MKNHNPQSRNWVRAR 157
>11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,
4221561-4222094,4222388-4222842,4223073-4223189,
4223319-4223477
Length = 2170
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 441 MVAYIPGIGHNLQEHNV-VLVRVGRLKDCPGVKLKCVR 551
+V+++PG H L E + L+++G KD P KL+ V+
Sbjct: 1475 LVSFVPGTNHQLSEACIGALIKLG--KDRPNCKLEMVK 1510
>10_08_0019 - 14167952-14171059
Length = 1035
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 231 AQTGLITRAMASLAQMHRTGPHIKKRKSRNP-LNGNPFAKGVVLKTVIKKPKKPNSANRK 407
A G + R + A ++ TG K P + G+P K ++ V + P ++ RK
Sbjct: 487 AVNGGVVRLLCQGAGLNTTGSVYKPDNVSPPEITGSPTEKALLSWAVEELPMDADALKRK 546
Query: 408 CVLVRL 425
C +VR+
Sbjct: 547 CKVVRV 552
>07_03_1723 - 29038701-29039213,29039341-29039413,29039504-29039594,
29039684-29039741,29039829-29039905,29040004-29040214,
29040339-29040386,29042496-29042608,29043270-29043341,
29044372-29046336,29046434-29046641,29046847-29047165,
29047813-29047937,29048024-29048157,29049089-29049164,
29049276-29049428,29049829-29050532,29050636-29050811,
29050945-29051107,29051199-29051341,29051802-29051914,
29053113-29053237,29053867-29054016,29054753-29054921,
29055201-29055418,29055499-29055709
Length = 2135
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +3
Query: 192 SIKPIVPSSSFLTAQTGLITRAMASLAQMHRTGPHIKKRKSRNPLNGNPFAKGVVLKTVI 371
SIKP VPSS+ ++ T + A S + TGP I K +P G + +++
Sbjct: 1290 SIKPTVPSSATSSSSTMQESAAKTS-DVLSPTGPSILPSKESMTKPSSPLPDGTISSSLL 1348
Query: 372 KKP 380
P
Sbjct: 1349 SIP 1351
>10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657
Length = 1032
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 435 KEMVAYIPGIGHNLQEHNVVLVRVGRLKDCPGVKLKCVRGKHDLSHVI 578
K+ +A++ GH+L+EH V R+ D V G +DLS ++
Sbjct: 660 KKSIAFLSRQGHDLREHRRRGVSPRRVYDGRSVTWLAYHGDYDLSFLL 707
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2
Query: 555 CLAHTLVSRRDNLLTFPLLPGPRCVPASYVRCRVYTP 445
C+A +V + ++L T L C+ AS++ +Y P
Sbjct: 325 CIAPLMVPQTESLTTIFLFGARICISASFIVLHIYAP 361
>02_05_0240 - 27110752-27111180
Length = 142
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 458 RHRT*LAGTQRGPGKSGKVKRLSRRETKVCARQAR 562
RHR AG GPG +++ L RR + A AR
Sbjct: 88 RHRQRAAGGAGGPGAEQRLQSLRRRSMRRAAEAAR 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,426,002
Number of Sequences: 37544
Number of extensions: 405510
Number of successful extensions: 1118
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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