Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30770
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)         74   1e-13
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)               57   2e-08
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)               45   5e-05
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)            29   4.7  
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)                  29   4.7  
SB_56500| Best HMM Match : Tctex-1 (HMM E-Value=0.0079)                28   6.2  
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)              28   6.2  
SB_54473| Best HMM Match : DLIC (HMM E-Value=0)                        28   8.3  
SB_27463| Best HMM Match : C_tripleX (HMM E-Value=0.11)                28   8.3  

>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
          Length = 302

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 43/88 (48%), Positives = 52/88 (59%), Gaps = 6/88 (6%)
 Frame = +3

Query: 252 RAMASLAQMHRTGPHIKK---RKSRNPLNG---NPFAKGVVLKTVIKKPKKPNSANRKCV 413
           R M +L Q+ R  P  K    +K   P       P  KGV +K  I+KPKKPNSA RKC 
Sbjct: 193 RWMPTLNQIRRQKPRTKNMAIKKFVPPSEKVMLGPQRKGVCVKVFIRKPKKPNSAQRKCA 252

Query: 414 LVRLSNGKEMVAYIPGIGHNLQEHNVVL 497
           L++LSNGK + AYIPG    LQEH VV+
Sbjct: 253 LLKLSNGKTISAYIPGERGQLQEHGVVI 280


>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 8/88 (9%)
 Frame = +3

Query: 294 HIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVAYIPGIG- 467
           H+      NP  G   AKG+VL+ V  + K+PNSA RKCV V+L  NGK++ A++P  G 
Sbjct: 30  HLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGC 89

Query: 468 -HNLQEHNVVLVR-VGR----LKDCPGV 533
            + ++E++ VL+   GR    + D PG+
Sbjct: 90  LNYIEENDEVLISGFGRRGHAVGDIPGI 117


>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 8/65 (12%)
 Frame = +3

Query: 381 KKPNSANRKCVLVRL-SNGKEMVAYIPGIG--HNLQEHNVVLVR-VGR----LKDCPGVK 536
           K+PNSA RKCV V+L  NGK++ A++P  G  + ++E++ VL+   GR    + D PGV+
Sbjct: 60  KQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGVR 119

Query: 537 LKCVR 551
            K V+
Sbjct: 120 FKVVK 124


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +2

Query: 497 GKSGKVKRLSRRETKVCARQARPVTRHQTEGVG*E---GHARNDHNNATDSS 643
           G  G+V+R+S+   +  A+ + P  + Q E +  +   G+  N HNNA DSS
Sbjct: 478 GLHGRVERISQVCKREIAKTSDPNQQDQLERLCLDIDQGNTSNAHNNAEDSS 529


>SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)
          Length = 581

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 152 DTVHNSQSNSTGGF-NKTNRAIVQFSNSPNWPHHEGNGVFGPDAQNRTSH 298
           D+V+ S  +STG   ++ + ++V FS SP+ P H   G+        TSH
Sbjct: 346 DSVNPSAPSSTGSSKSQIDVSVVMFSISPDAPAHSKGGLTAAFYATVTSH 395


>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
          Length = 1774

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/82 (23%), Positives = 38/82 (46%)
 Frame = +3

Query: 108  NLIRRGMSLLSLGFKTQCTTLRAIQPAASIKPIVPSSSFLTAQTGLITRAMASLAQMHRT 287
            +L+      L+L   TQ  + +++QP   + PIVP+SS +        +   S+ + + T
Sbjct: 1069 SLVTHDSQRLTL-MSTQVVSSQSVQPVTRVDPIVPNSSGICD----AVKTPISIDKSYLT 1123

Query: 288  GPHIKKRKSRNPLNGNPFAKGV 353
              H K+        G+ + +G+
Sbjct: 1124 EQHSKRAMPDRSEPGDMYLRGI 1145


>SB_56500| Best HMM Match : Tctex-1 (HMM E-Value=0.0079)
          Length = 502

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +3

Query: 351 VVLKTVIKKPKKPNSANRK--CVLVRLSNGKEMVAYIPGIGHNLQEHNVVL 497
           +VL++ I +P+KPNS+N +   V+V       ++A+  G G   +E  + L
Sbjct: 18  IVLRS-IARPRKPNSSNARESQVMVDKKTSSPIIAFASGPGFESREKEINL 67


>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
          Length = 1290

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 450 YIPGIGHNLQEHNVVLVRVGRLKDCPGVKLKCV--RGKHDLSHVIKQ 584
           +IP  GHN Q H++ L +     + PG K K +   G +   H I Q
Sbjct: 656 FIPSTGHNGQVHSIHLAQRASSSNPPGTKPKFIPSTGHNGQVHPIPQ 702


>SB_54473| Best HMM Match : DLIC (HMM E-Value=0)
          Length = 1401

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 31/124 (25%), Positives = 46/124 (37%), Gaps = 6/124 (4%)
 Frame = +3

Query: 54   WL*NNYQYSI---KHNNQVKMNL---IRRGMSLLSLGFKTQCTTLRAIQPAASIKPIVPS 215
            WL  NY  S+   KH    K+N+       + L  +   TQ TT     P  SI  ++  
Sbjct: 1114 WL-ANYNASVDTPKHKKNKKINIGDAATINVELNKIIGNTQLTTADGWLPLRSIDRLLLV 1172

Query: 216  SSFLTAQTGLITRAMASLAQMHRTGPHIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNS 395
            +  L   TG +        Q H        R   N      F + +V +  + KP+ P S
Sbjct: 1173 TPKLFL-TGFLAAGFTFWNQQHNVNMGRALRGYNNIAVMTVFQRSLVCRNDLSKPRSPGS 1231

Query: 396  ANRK 407
            A  +
Sbjct: 1232 AGAR 1235


>SB_27463| Best HMM Match : C_tripleX (HMM E-Value=0.11)
          Length = 123

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 586 FCLMTCDRSCLPRTHFSFTPGQ 521
           FCL +C RSC      ++TPGQ
Sbjct: 13  FCLPSCKRSCCLPNAPNYTPGQ 34


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,576,841
Number of Sequences: 59808
Number of extensions: 469200
Number of successful extensions: 1141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)