Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30770
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92838-1|CAB07406.1| 157|Caenorhabditis elegans Hypothetical pr... 112 2e-25
Z70684-7|CAA94601.1| 143|Caenorhabditis elegans Hypothetical pr... 64 9e-11
U41023-3|AAA82342.2| 435|Caenorhabditis elegans Arrestin family... 31 1.0
Z81050-7|CAB02853.1| 154|Caenorhabditis elegans Hypothetical pr... 29 4.2
AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical ... 28 5.5
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 28 7.3
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 28 7.3
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 28 7.3
AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical ... 28 7.3
Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z66494-4|CAA91263.1| 599|Caenorhabditis elegans Hypothetical pr... 27 9.6
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 27 9.6
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical... 27 9.6
>Z92838-1|CAB07406.1| 157|Caenorhabditis elegans Hypothetical
protein T03D8.2 protein.
Length = 157
Score = 112 bits (270), Expect = 2e-25
Identities = 53/97 (54%), Positives = 70/97 (72%), Gaps = 2/97 (2%)
Frame = +3
Query: 279 HRTGPHIKKRKSRNP--LNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRLSNGKEMVAY 452
+R GP ++ +S++ ++G KG+VLKTVI+ PKKPNS NRKC +VRLS G E+ AY
Sbjct: 53 YRNGPPKRRARSKDKSAISGYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRLSTGAEVCAY 112
Query: 453 IPGIGHNLQEHNVVLVRVGRLKDCPGVKLKCVRGKHD 563
IP +GHNLQEH+ VLV+ GR +D VK VRGK+D
Sbjct: 113 IPNVGHNLQEHSQVLVKGGRRRDLISVKANIVRGKYD 149
>Z70684-7|CAA94601.1| 143|Caenorhabditis elegans Hypothetical
protein F28D1.7 protein.
Length = 143
Score = 64.1 bits (149), Expect = 9e-11
Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 8/94 (8%)
Frame = +3
Query: 294 HIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVAYIPGIG- 467
HI R NP G AKG+VL+ + + K+PNSA RKCV V+L NGK++ A++P G
Sbjct: 31 HIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGC 90
Query: 468 -HNLQEHNVVLVR-VGR----LKDCPGVKLKCVR 551
+ ++E++ VLV GR + D PGV+ K V+
Sbjct: 91 LNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVK 124
>U41023-3|AAA82342.2| 435|Caenorhabditis elegans Arrestin family
protein 1 protein.
Length = 435
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 297 IKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRLSNGKEMV 446
+K R PLNG FA+ T K P+ P +R + +NG E V
Sbjct: 337 VKVRAVLGPLNGELFAELPFTLTHSKPPESPERTDRGLPSIEATNGSEPV 386
>Z81050-7|CAB02853.1| 154|Caenorhabditis elegans Hypothetical
protein C50B6.9 protein.
Length = 154
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 399 NRKCVLVRLSNGKEMVAYIPGIGHNLQEHNVVLVRVGRLKD 521
N K ++ R+++ + IPG+ HN VL R+G+L D
Sbjct: 100 NSKKLMQRMASTYKDFHRIPGVDHNFDLDEEVLKRLGQLMD 140
>AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical
protein H05C05.1a protein.
Length = 820
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +2
Query: 80 YKTQ*SSKDESYKKRNVAPISRLQDTVHNSQSNSTGGFNKTNRAIVQFSNSPNWPHHEGN 259
Y Q SS + Y N P+ R HN ++T + + Q+SN ++ ++ G
Sbjct: 214 YDRQNSSGRDDYHHGNGGPLQRSGSYQHNHNHSNTKDYGR------QYSNHNHYSNYHGG 267
Query: 260 GVFGP-DAQNRT-SH 298
G G A++RT SH
Sbjct: 268 GGPGSISARSRTESH 282
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 339 FAKGVVLKTVIKKPKKPNSANRKCVLVRLSNGKEMVAY 452
FA +L+T+ K+P PN+ +K +L+ + + Y
Sbjct: 2602 FALWGMLRTIAKRPTDPNNKRKKVILLNCATPWRTIEY 2639
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 339 FAKGVVLKTVIKKPKKPNSANRKCVLVRLSNGKEMVAY 452
FA +L+T+ K+P PN+ +K +L+ + + Y
Sbjct: 2613 FALWGMLRTIAKRPTDPNNKRKKVILLNCATPWRTIEY 2650
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 339 FAKGVVLKTVIKKPKKPNSANRKCVLVRLSNGKEMVAY 452
FA +L+T+ K+P PN+ +K +L+ + + Y
Sbjct: 2613 FALWGMLRTIAKRPTDPNNKRKKVILLNCATPWRTIEY 2650
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 339 FAKGVVLKTVIKKPKKPNSANRKCVLVRLSNGKEMVAY 452
FA +L+T+ K+P PN+ +K +L+ + + Y
Sbjct: 2613 FALWGMLRTIAKRPTDPNNKRKKVILLNCATPWRTIEY 2650
>AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical
protein W09G12.7 protein.
Length = 368
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 291 PHIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRK 407
P KK+KS+ P + V +K + K KKP R+
Sbjct: 189 PKKKKKKSKKPKKAPKSDEEVTIKIIKKPKKKPEDLERR 227
>Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical protein
K07G5.3 protein.
Length = 1202
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +3
Query: 357 LKTVIKKPKKPNSANRKCVLVRLSNGKEMVAYIPGIGHNLQEHNVVLVRVGRLKDCP 527
L+ +++ P+ ++ + +VRL G E+ I + ++ E V V RL+D P
Sbjct: 1113 LREILENPRGITESSVEERIVRLKEGYELTVIIIRVNYSSMEECVHEVLSNRLQDTP 1169
>Z66494-4|CAA91263.1| 599|Caenorhabditis elegans Hypothetical
protein C34C6.4 protein.
Length = 599
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 441 MVAYIPGIGHNLQEHNVVLVR 503
+VA +PG+G NLQ+H + V+
Sbjct: 329 IVANLPGVGQNLQDHLEIYVQ 349
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 27.5 bits (58), Expect = 9.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 441 FPCRLTILPERIYGSRS 391
FPC+L +LP +Y +R+
Sbjct: 944 FPCKLRVLPNHVYNTRN 960
>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
protein Y54F10BM.2 protein.
Length = 1173
Score = 27.5 bits (58), Expect = 9.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 441 FPCRLTILPERIYGSRS 391
FPC+L +LP +Y +R+
Sbjct: 1043 FPCKLRVLPNHVYNTRN 1059
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,787,068
Number of Sequences: 27780
Number of extensions: 342381
Number of successful extensions: 896
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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