Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30770
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam...    96   2e-20
At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo...    57   1e-08
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi...    54   1e-07
At5g63160.1 68418.m07930 speckle-type POZ  protein-related conta...    30   1.3  
At5g48780.1 68418.m06036 disease resistance protein (TIR-NBS cla...    30   1.7  
At1g08560.1 68414.m00949 syntaxin-related protein KNOLLE (KN) / ...    28   5.1  
At4g09290.1 68417.m01537 hypothetical protein                          28   6.8  
At2g21940.2 68415.m02607 shikimate kinase, putative similar to s...    27   8.9  

>At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family
           protein
          Length = 125

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 51/104 (49%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
 Frame = +3

Query: 258 MASLAQMHRTGPHIKKRKSRN-PLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRLSNG 434
           M +  Q+ R G   K+R  R   L+  P   GV  +   + PKKPNSA RK   VRLSN 
Sbjct: 1   MPTFNQLIRHGREEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 435 KEMVAYIPGIGHNLQEHNVVLVRVGRLKDCPGVKLKCVRGKHDL 566
            ++ A+IPG GHN QEH+ VL+R GR+KD PGVK  C+RG  DL
Sbjct: 61  HDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDL 104


>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
           ribosomal protein S23, Fragaria x ananassa, PIR:S56673
          Length = 142

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 8/87 (9%)
 Frame = +3

Query: 315 RNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVAYIPGIG--HNLQEH 485
           + P  G+  AKG+VL+ +  + K+PNSA RKC  V+L  NGK++ A++P  G  + ++E+
Sbjct: 37  KKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEEN 96

Query: 486 NVVLVR-VGR----LKDCPGVKLKCVR 551
           + VL+   GR    + D PGV+ K V+
Sbjct: 97  DEVLIAGFGRKGHAVGDIPGVRFKVVK 123


>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
           to 40S ribosomal protein S23 (S12) GB:P46297 from
           [Fragaria x ananassa]
          Length = 142

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 8/87 (9%)
 Frame = +3

Query: 315 RNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVAYIPGIG--HNLQEH 485
           + P   +  AKG+VL+ +  + K+PNSA RKC  V+L  NGK++ A++P  G  + ++E+
Sbjct: 37  KKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEEN 96

Query: 486 NVVLVR-VGR----LKDCPGVKLKCVR 551
           + VL+   GR    + D PGV+ K V+
Sbjct: 97  DEVLIAGFGRKGHAVGDIPGVRFKVVK 123


>At5g63160.1 68418.m07930 speckle-type POZ  protein-related contains
           Pfam PF00651 : BTB/POZ domain; contains Pfam PF02135 :
           TAZ zinc finger; similar to Speckle-type POZ protein
           (SP:O43791) [Homo sapiens]
          Length = 365

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 459 GIGHNLQEHNVV-LVRVGRLKDCPGVKLKCVRGKHDLSHVIKQ 584
           G+G  +   NVV ++++ RL D P + LKC+R  H     ++Q
Sbjct: 123 GVGERVTAENVVDILQLARLCDAPDLCLKCMRFIHYKFKTVEQ 165


>At5g48780.1 68418.m06036 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 669

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 28/81 (34%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
 Frame = -1

Query: 556 LPRTHFSFTPGQSFNLPTLTRTTLCSCKLCPMPGIYATISLPFDNLTRT---HLRFAEFG 386
           L R   SF PG    + T TR    S    P+P  Y  + L F    +    H       
Sbjct: 298 LARVISSFGPGS--RIITTTRNLQFS-STSPLPFQYEVLGLEFSEALQLFCLHAFEQTHP 354

Query: 385 FLGFFITVFRTTPLAKGFPLS 323
           FLGF     R   LA GFPLS
Sbjct: 355 FLGFEDLSCRAVKLAGGFPLS 375


>At1g08560.1 68414.m00949 syntaxin-related protein KNOLLE (KN) /
           syntaxin 111 (SYP111) identical to SP|Q42374
           Syntaxin-related protein KNOLLE (Syntaxin 111)
           (AtSYP111) {Arabidopsis thaliana}; BAC F22O13 has a
           deletion of a cytosine at position 7887
          Length = 310

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/91 (19%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
 Frame = +3

Query: 147 FKTQCTTLRAIQPAASIKPIVPSSSFLTAQTGLITRAMASLAQMHRTGPHIKKRKSRNPL 326
           F  +  + +A +   ++   +  + ++ A+ GLI+  +A + Q H     + K +S   L
Sbjct: 29  FDLEMASTKADKMDENLSSFLEEAEYVKAEMGLISETLARIEQYHEESKGVHKAESVKSL 88

Query: 327 N---GNPFAKGV-VLKTVIKKPKKPNSANRK 407
                N    G+   K++  K ++ + AN++
Sbjct: 89  RNKISNEIVSGLRKAKSIKSKLEEMDKANKE 119


>At4g09290.1 68417.m01537 hypothetical protein
          Length = 376

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
 Frame = +3

Query: 249 TRAMASLAQMHRTGPHIKKRKSRNPLN-GNPFAKGVVLKTVIKKPKKPNSANRK 407
           +R + S+    R        K + P   G   A  V  K  IKKPK P  A  K
Sbjct: 249 SRRLRSMTAARRISKAKTSPKKKEPAKRGRKAATKVTPKVTIKKPKSPKEAKEK 302


>At2g21940.2 68415.m02607 shikimate kinase, putative similar to
           shikimate kinase precursor from Lycopersicon esculentum
           [SP|Q00497]; contains Pfam shikimate kinase domain
           PF01202
          Length = 304

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +3

Query: 78  SIKHNNQVKMNLIRRGMSLLSLGFKTQCTTLRAIQPAASIKPIVPSSSFLTAQTGLI 248
           S++++ QVK++   RG+SL  L  + +    RA+ PA S      S + L  +TG +
Sbjct: 28  SLRYSQQVKVDRRFRGLSLARLQPERRNDQRRAVSPAVSCSDNNSSGALL--ETGSV 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,832,586
Number of Sequences: 28952
Number of extensions: 321227
Number of successful extensions: 863
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)